Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q13 entry

There is 1 chain in PDB entry 3Q13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 192ALA 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 3Q13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
253 263Right-handed alpha
Helix 2
2
A
265 274Right-handed alpha
Helix 3
3
A
275 277Right-handed 310
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There are 4 sheets in PDB entry 3Q13. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 308first strand
Strand 2
A
204 213anti-parallel
Strand 3
A
401 411anti-parallel
Strand 4
A
345 350anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 308first strand
Strand 2
A
204 213anti-parallel
Strand 3
A
401 411anti-parallel
Strand 4
A
425 426parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
313 321anti-parallel
Strand 3
A
234 239anti-parallel
Strand 4
A
279 285anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
313 321anti-parallel
Strand 3
A
326 334anti-parallel
Strand 4
A
353 354anti-parallel
Strand 5
A
377 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il