Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q6M entry

There are 3 chains in PDB entry 3Q6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 294GLY 697
B
 LYS 294ASP 699
C
 LYS 294GLY 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 3Q6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
295 299Right-handed 310
Helix 2
2
A
305 318Right-handed alpha
Helix 3
3
A
379 383Right-handed 310
Helix 4
4
A
407 428Right-handed alpha
Helix 5
5
A
430 452Right-handed alpha
Helix 6
6
A
455 461Right-handed alpha
Helix 7
7
A
477 483Right-handed alpha
Helix 8
8
A
498 504Right-handed alpha
Helix 9
9
A
505 507Right-handed 310
Helix 10
10
A
508 515Right-handed alpha
Helix 11
11
A
524 530Right-handed alpha
Helix 12
12
A
554 568Right-handed alpha
Helix 13
13
A
568 579Right-handed alpha
Helix 14
14
A
580 583Right-handed 310
Helix 15
15
A
607 614Right-handed alpha
Helix 16
16
A
640 653Right-handed alpha
Helix 17
17
A
656 674Right-handed alpha
Helix 18
18
A
680 695Right-handed alpha
Helix 19
19
B
295 299Right-handed 310
Helix 20
20
B
305 318Right-handed alpha
Helix 21
21
B
379 383Right-handed 310
Helix 22
22
B
407 430Right-handed alpha
Helix 23
23
B
434 452Right-handed alpha
Helix 24
24
B
455 461Right-handed alpha
Helix 25
25
B
476 484Right-handed alpha
Helix 26
26
B
498 504Right-handed alpha
Helix 27
27
B
505 507Right-handed 310
Helix 28
28
B
508 515Right-handed alpha
Helix 29
29
B
523 531Right-handed alpha
Helix 30
30
B
556 568Right-handed alpha
Helix 31
31
B
568 579Right-handed alpha
Helix 32
32
B
580 583Right-handed 310
Helix 33
33
B
607 614Right-handed alpha
Helix 34
34
B
640 653Right-handed alpha
Helix 35
35
B
656 674Right-handed alpha
Helix 36
36
B
680 696Right-handed alpha
Helix 37
37
C
295 299Right-handed 310
Helix 38
38
C
305 318Right-handed alpha
Helix 39
39
C
379 383Right-handed 310
Helix 40
40
C
408 430Right-handed alpha
Helix 41
41
C
433 452Right-handed alpha
Helix 42
42
C
455 461Right-handed alpha
Helix 43
43
C
469 471Right-handed 310
Helix 44
44
C
477 483Right-handed alpha
Helix 45
45
C
498 504Right-handed alpha
Helix 46
46
C
505 507Right-handed 310
Helix 47
47
C
508 514Right-handed alpha
Helix 48
48
C
523 530Right-handed alpha
Helix 49
49
C
554 568Right-handed alpha
Helix 50
50
C
568 578Right-handed alpha
Helix 51
51
C
640 652Right-handed alpha
Helix 52
52
C
655 674Right-handed alpha
Helix 53
53
C
680 694Right-handed alpha
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There are 9 sheets in PDB entry 3Q6M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 331first strand
Strand 2
A
337 343anti-parallel
Strand 3
A
386 391anti-parallel
Strand 4
A
361 365parallel
Strand 5
A
368 371anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 476first strand
Strand 2
A
464 467anti-parallel
Strand 3
A
518 521anti-parallel
Strand 4
A
490 495parallel
Strand 5
A
539 543parallel
Strand 6
A
535 536anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 588first strand
Strand 2
A
632 636parallel
Strand 3
A
597 601anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 331first strand
Strand 2
B
337 343anti-parallel
Strand 3
B
386 391anti-parallel
Strand 4
B
361 365parallel
Strand 5
B
368 371anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 467first strand
Strand 2
B
518 521anti-parallel
Strand 3
B
490 495parallel
Strand 4
B
539 543parallel
Strand 5
B
535 536anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
585 588first strand
Strand 2
B
632 636parallel
Strand 3
B
597 601anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
325 331first strand
Strand 2
C
337 343anti-parallel
Strand 3
C
386 391anti-parallel
Strand 4
C
361 365parallel
Strand 5
C
368 371anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
475 476first strand
Strand 2
C
464 467anti-parallel
Strand 3
C
518 521anti-parallel
Strand 4
C
490 495parallel
Strand 5
C
539 543parallel
Strand 6
C
535 536anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
586 588first strand
Strand 2
C
633 636parallel
Strand 3
C
597 600anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il