Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q88 entry

There is 1 chain in PDB entry 3Q88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1ASN 539
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 3Q88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
11 15Right-handed 310
Helix 3
3
A
17 25Right-handed alpha
Helix 4
4
A
27 32Right-handed alpha
Helix 5
5
A
49 63Right-handed alpha
Helix 6
6
A
64 74Right-handed alpha
Helix 7
7
A
87 92Right-handed alpha
Helix 8
8
A
106 126Right-handed alpha
Helix 9
9
A
145 148Right-handed 310
Helix 10
10
A
149 159Right-handed alpha
Helix 11
11
A
160 163Right-handed 310
Helix 12
12
A
177 185Right-handed alpha
Helix 13
13
A
186 187Right-handed 310
Helix 14
14
A
188 190Right-handed 310
Helix 15
15
A
203 222Right-handed alpha
Helix 16
16
A
223 225Right-handed 310
Helix 17
17
A
226 230Right-handed alpha
Helix 18
18
A
237 245Right-handed alpha
Helix 19
19
A
247 249Right-handed 310
Helix 20
20
A
259 263Right-handed 310
Helix 21
21
A
266 268Right-handed 310
Helix 22
22
A
269 277Right-handed alpha
Helix 23
23
A
277 298Right-handed alpha
Helix 24
24
A
299 302Right-handed 310
Helix 25
25
A
303 319Right-handed alpha
Helix 26
26
A
330 334Right-handed 310
Helix 27
27
A
335 349Right-handed alpha
Helix 28
28
A
373 377Right-handed 310
Helix 29
29
A
379 386Right-handed alpha
Helix 30
30
A
404 425Right-handed alpha
Helix 31
31
A
427 438Right-handed alpha
Helix 32
32
A
441 453Right-handed alpha
Helix 33
33
A
469 491Right-handed alpha
Helix 34
34
A
498 500Right-handed 310
Helix 35
35
A
501 517Right-handed alpha
Helix 36
36
A
520 526Right-handed alpha
Helix 37
37
A
527 537Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3Q88. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
39 42anti-parallel
Strand 3
A
460 467anti-parallel
Strand 4
A
392 399parallel
Strand 5
A
323 328parallel
Strand 6
A
366 369parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 172first strand
Strand 2
A
139 143parallel
Strand 3
A
192 197parallel
Strand 4
A
231 234parallel
Strand 5
A
251 252parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il