Analysis of interatomic Contacts of Structural Units in PDB entry:
3QFC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QFC entry

There are 2 chains in PDB entry 3QFC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 69SER 680
B
 SER 70SER 680
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 3QFC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 80Right-handed alpha
Helix 2
2
A
92 105Right-handed alpha
Helix 3
3
A
106 109Right-handed 310
Helix 4
4
A
116 120Right-handed 310
Helix 5
5
A
121 131Right-handed 310
Helix 6
6
A
144 146Right-handed 310
Helix 7
7
A
152 162Right-handed alpha
Helix 8
8
A
185 198Right-handed alpha
Helix 9
9
A
214 235Right-handed alpha
Helix 10
10
A
257 261Right-handed 310
Helix 11
11
A
330 342Right-handed alpha
Helix 12
12
A
370 377Right-handed alpha
Helix 13
13
A
385 394Right-handed alpha
Helix 14
14
A
398 408Right-handed alpha
Helix 15
15
A
412 423Right-handed alpha
Helix 16
16
A
429 436Right-handed alpha
Helix 17
17
A
443 451Right-handed alpha
Helix 18
18
A
491 499Right-handed alpha
Helix 19
19
A
536 539Right-handed 310
Helix 20
20
A
540 556Right-handed alpha
Helix 21
21
A
578 588Right-handed alpha
Helix 22
22
A
607 615Right-handed alpha
Helix 23
23
A
615 626Right-handed alpha
Helix 24
24
A
637 654Right-handed alpha
Helix 25
25
A
657 671Right-handed alpha
Helix 26
26
B
71 80Right-handed alpha
Helix 27
27
B
92 105Right-handed alpha
Helix 28
28
B
106 109Right-handed 310
Helix 29
29
B
116 120Right-handed 310
Helix 30
30
B
121 131Right-handed 310
Helix 31
31
B
152 162Right-handed alpha
Helix 32
32
B
185 198Right-handed alpha
Helix 33
33
B
214 235Right-handed alpha
Helix 34
34
B
257 261Right-handed 310
Helix 35
35
B
330 342Right-handed alpha
Helix 36
36
B
370 377Right-handed alpha
Helix 37
37
B
385 393Right-handed alpha
Helix 38
38
B
394 396Right-handed 310
Helix 39
39
B
398 408Right-handed alpha
Helix 40
40
B
412 423Right-handed alpha
Helix 41
41
B
429 437Right-handed alpha
Helix 42
42
B
443 451Right-handed alpha
Helix 43
43
B
491 499Right-handed alpha
Helix 44
44
B
536 539Right-handed 310
Helix 45
45
B
540 556Right-handed alpha
Helix 46
46
B
578 588Right-handed alpha
Helix 47
47
B
607 615Right-handed alpha
Helix 48
48
B
615 625Right-handed alpha
Helix 49
49
B
637 654Right-handed alpha
Helix 50
50
B
657 671Right-handed alpha
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There are 11 sheets in PDB entry 3QFC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
83 88parallel
Strand 3
A
135 143parallel
Strand 4
A
147 148anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
83 88parallel
Strand 3
A
135 143parallel
Strand 4
A
170 177parallel
Strand 5
A
201 210parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
368 369anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 460first strand
Strand 2
A
322 325anti-parallel
Strand 3
A
511 517anti-parallel
Strand 4
A
285 294anti-parallel
Strand 5
A
303 309anti-parallel
Strand 6
A
471 477anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 482first strand
Strand 2
A
488 490anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 598first strand
Strand 2
A
563 569parallel
Strand 3
A
531 534parallel
Strand 4
A
628 634parallel
Strand 5
A
674 679parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
83 88parallel
Strand 3
B
135 143parallel
Strand 4
B
170 177parallel
Strand 5
B
201 202parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
135 143anti-parallel
Strand 3
B
170 177parallel
Strand 4
B
207 210parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 252first strand
Strand 2
B
348 353anti-parallel
Strand 3
B
368 369anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 460first strand
Strand 2
B
322 325anti-parallel
Strand 3
B
511 517anti-parallel
Strand 4
B
285 294anti-parallel
Strand 5
B
303 309anti-parallel
Strand 6
B
471 477anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
593 598first strand
Strand 2
B
563 569parallel
Strand 3
B
531 534parallel
Strand 4
B
628 634parallel
Strand 5
B
674 679parallel
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