Analysis of interatomic Contacts of Structural Units in PDB entry:
3QPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QPM entry

There are 5 chains in PDB entry 3QPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 63ASP 257
B
 HIS 64ASP 257
C
 HIS 64ASP 257
D
 HIS 64MET 259
E
 HIS 64LYS 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3QPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 96Right-handed 310
Helix 2
2
A
111 129Right-handed alpha
Helix 3
3
A
141 151Right-handed alpha
Helix 4
4
A
152 156Right-handed 310
Helix 5
5
A
171 177Right-handed alpha
Helix 6
6
A
213 231Right-handed alpha
Helix 7
7
A
252 257Right-handed alpha
Helix 8
8
B
93 96Right-handed 310
Helix 9
9
B
111 123Right-handed alpha
Helix 10
10
B
123 129Right-handed alpha
Helix 11
11
B
141 151Right-handed alpha
Helix 12
12
B
152 156Right-handed 310
Helix 13
13
B
171 177Right-handed alpha
Helix 14
14
B
213 231Right-handed alpha
Helix 15
15
B
252 257Right-handed alpha
Helix 16
16
C
93 96Right-handed 310
Helix 17
17
C
111 123Right-handed alpha
Helix 18
18
C
123 129Right-handed alpha
Helix 19
19
C
141 151Right-handed alpha
Helix 20
20
C
152 156Right-handed 310
Helix 21
21
C
171 177Right-handed alpha
Helix 22
22
C
213 231Right-handed alpha
Helix 23
23
C
252 257Right-handed alpha
Helix 24
24
D
93 96Right-handed 310
Helix 25
25
D
111 129Right-handed alpha
Helix 26
26
D
141 151Right-handed alpha
Helix 27
27
D
152 156Right-handed 310
Helix 28
28
D
171 177Right-handed alpha
Helix 29
29
D
213 231Right-handed alpha
Helix 30
30
D
252 257Right-handed alpha
Helix 31
31
E
93 96Right-handed 310
Helix 32
32
E
111 123Right-handed alpha
Helix 33
33
E
123 129Right-handed alpha
Helix 34
34
E
141 151Right-handed alpha
Helix 35
35
E
152 156Right-handed 310
Helix 36
36
E
171 177Right-handed alpha
Helix 37
37
E
213 231Right-handed alpha
Helix 38
38
E
252 257Right-handed alpha
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There are 6 sheets in PDB entry 3QPM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
B
64 66anti-parallel
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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 91first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
165 167anti-parallel
Strand 4
A
132 138parallel
Strand 5
A
99 104parallel
Strand 6
A
189 194anti-parallel
Strand 7
A
200 206anti-parallel
Strand 8
B
200 206anti-parallel
Strand 9
B
189 194anti-parallel
Strand 10
B
99 104anti-parallel
Strand 11
B
132 138parallel
Strand 12
B
165 167parallel
Strand 13
B
78 83anti-parallel
Strand 14
B
86 91anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 66first strand
Strand 2
D
64 66anti-parallel
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There are 14 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 91first strand
Strand 2
C
78 83anti-parallel
Strand 3
C
165 167anti-parallel
Strand 4
C
132 138parallel
Strand 5
C
99 104parallel
Strand 6
C
189 194anti-parallel
Strand 7
C
200 206anti-parallel
Strand 8
D
200 206anti-parallel
Strand 9
D
189 194anti-parallel
Strand 10
D
99 104anti-parallel
Strand 11
D
132 138parallel
Strand 12
D
165 167parallel
Strand 13
D
78 83anti-parallel
Strand 14
D
86 91anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
86 91first strand
Strand 2
E
78 83anti-parallel
Strand 3
E
165 167anti-parallel
Strand 4
E
132 138parallel
Strand 5
E
99 104parallel
Strand 6
E
189 194anti-parallel
Strand 7
E
200 206anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
180 181first strand
Strand 2
E
186 144anti-parallel
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