Analysis of interatomic Contacts of Structural Units in PDB entry:
3R5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R5J entry

There are 6 chains in PDB entry 3R5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 174GLN 332
B
 LYS 355PRO 451
C
 MET 174GLN 332
D
 LYS 355PRO 451
F
 ALA 402ALA 405
E
 ALA 402ALA 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3R5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
180 188Right-handed alpha
Helix 2
2
A
189 191Right-handed 310
Helix 3
3
A
221 236Right-handed alpha
Helix 4
4
A
247 260Right-handed alpha
Helix 5
5
A
261 266Right-handed 310
Helix 6
6
A
293 300Right-handed alpha
Helix 7
7
A
305 309Right-handed 310
Helix 8
8
B
385 398Right-handed alpha
Helix 9
9
B
402 417Right-handed alpha
Helix 10
10
C
180 188Right-handed alpha
Helix 11
11
C
189 191Right-handed 310
Helix 12
12
C
221 236Right-handed alpha
Helix 13
13
C
247 260Right-handed alpha
Helix 14
14
C
261 267Right-handed 310
Helix 15
15
C
293 299Right-handed alpha
Helix 16
16
C
305 309Right-handed 310
Helix 17
17
D
385 398Right-handed alpha
Helix 18
18
D
402 417Right-handed alpha
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There are 7 sheets in PDB entry 3R5J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 244first strand
Strand 2
A
200 206parallel
Strand 3
A
269 275parallel
Strand 4
A
313 318parallel
Strand 5
B
364 368parallel
Strand 6
B
434 437anti-parallel
Strand 7
D
434 437anti-parallel
Strand 8
D
364 368anti-parallel
Strand 9
C
313 318parallel
Strand 10
C
269 275parallel
Strand 11
C
200 206parallel
Strand 12
C
239 244parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
282 284anti-parallel
Strand 3
A
290 292anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
D
357 358anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
C
329 330anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 384first strand
Strand 2
B
377 379anti-parallel
Strand 3
E
403 405anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
278 279first strand
Strand 2
C
282 284anti-parallel
Strand 3
C
290 292anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
383 384first strand
Strand 2
D
377 379anti-parallel
Strand 3
F
403 405anti-parallel
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