Analysis of interatomic Contacts of Structural Units in PDB entry:
3R88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R88 entry

There are 2 chains in PDB entry 3R88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 25ILE 370
B
 PRO 25ILE 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 3R88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 36Right-handed alpha
Helix 2
2
A
43 54Right-handed alpha
Helix 3
3
A
58 73Right-handed alpha
Helix 4
4
A
75 90Right-handed alpha
Helix 5
5
A
117 129Right-handed alpha
Helix 6
6
A
146 154Right-handed alpha
Helix 7
7
A
161 173Right-handed alpha
Helix 8
8
A
179 183Right-handed alpha
Helix 9
9
A
186 197Right-handed alpha
Helix 10
10
A
200 203Right-handed 310
Helix 11
11
A
204 209Right-handed alpha
Helix 12
12
A
226 237Right-handed alpha
Helix 13
13
A
275 280Right-handed 310
Helix 14
14
A
285 290Right-handed 310
Helix 15
15
A
293 306Right-handed alpha
Helix 16
16
A
310 329Right-handed alpha
Helix 17
17
A
335 353Right-handed alpha
Helix 18
18
A
354 369Right-handed alpha
Helix 19
19
B
26 36Right-handed alpha
Helix 20
20
B
43 54Right-handed alpha
Helix 21
21
B
58 73Right-handed alpha
Helix 22
22
B
75 90Right-handed alpha
Helix 23
23
B
117 129Right-handed alpha
Helix 24
24
B
146 154Right-handed alpha
Helix 25
25
B
161 172Right-handed alpha
Helix 26
26
B
179 183Right-handed alpha
Helix 27
27
B
186 197Right-handed alpha
Helix 28
28
B
200 203Right-handed 310
Helix 29
29
B
204 209Right-handed alpha
Helix 30
30
B
226 237Right-handed alpha
Helix 31
31
B
275 280Right-handed 310
Helix 32
32
B
285 290Right-handed 310
Helix 33
33
B
293 306Right-handed alpha
Helix 34
34
B
310 329Right-handed alpha
Helix 35
35
B
335 353Right-handed alpha
Helix 36
36
B
354 369Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3R88. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
216 220parallel
Strand 3
A
240 246parallel
Strand 4
A
259 265anti-parallel
Strand 5
A
268 274anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
174 178parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 107first strand
Strand 2
B
216 220parallel
Strand 3
B
240 246parallel
Strand 4
B
259 265anti-parallel
Strand 5
B
268 274anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
174 178parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il