Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 3RD4 entry
There are 4 chains in PDB entry 3RD4
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
ALA 2 | ASP 89 |
B
|
ALA 2 | PRO 87 |
C
|
ALA 2 | PRO 87 |
D
|
PRO 3 | VAL 86 |
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There are 4
helices in PDB entry 3RD4. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 57 |
63 | Right-handed alpha |
Helix 2 |
2 | B
| 57 |
62 | Right-handed alpha |
Helix 3 |
3 | C
| 57 |
64 | Right-handed alpha |
Helix 4 |
4 | D
| 57 |
63 | Right-handed alpha |
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There are no sheets in PDB entry
3RD4
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il