Analysis of interatomic Contacts of Structural Units in PDB entry:
3S98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S98 entry

There is 1 chain in PDB entry 3S98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 7THR 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3S98. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
94 99Right-handed alpha
Helix 2
2
A
180 183Right-handed 310
Helix 3
3
A
238 241Right-handed 310
Helix 4
4
A
254 257Right-handed 310
Helix 5
5
A
269 271Right-handed 310
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There are 7 sheets in PDB entry 3S98. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
10 14first strand
Strand 2
A
17 21anti-parallel
Strand 3
A
59 61anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 48first strand
Strand 2
A
33 40anti-parallel
Strand 3
A
73 80anti-parallel
Strand 4
A
85 89anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
105 110first strand
Strand 2
A
115 120anti-parallel
Strand 3
A
159 162anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 156first strand
Strand 2
A
137 144anti-parallel
Strand 3
A
170 179anti-parallel
Strand 4
A
184 185anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 156first strand
Strand 2
A
137 144anti-parallel
Strand 3
A
170 179anti-parallel
Strand 4
A
192 195anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
206 213first strand
Strand 2
A
216 222anti-parallel
Strand 3
A
263 267anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
251 252first strand
Strand 2
A
229 236anti-parallel
Strand 3
A
275 283anti-parallel
Strand 4
A
295 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il