Analysis of interatomic Contacts of Structural Units in PDB entry:
3SUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SUP entry

There are 4 chains in PDB entry 3SUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1PHE 903
T
C 3 C 3
T
T 5 G 18
P
C 103 G 114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3SUP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
64 79Right-handed alpha
Helix 2
2
A
87 97Right-handed alpha
Helix 3
3
A
104 108Right-handed 310
Helix 4
4
A
163 169Right-handed alpha
Helix 5
5
A
170 174Right-handed 310
Helix 6
6
A
179 184Right-handed alpha
Helix 7
7
A
193 208Right-handed alpha
Helix 8
8
A
221 235Right-handed alpha
Helix 9
9
A
235 240Right-handed alpha
Helix 10
10
A
241 243Right-handed 310
Helix 11
11
A
272 281Right-handed alpha
Helix 12
12
A
289 299Right-handed alpha
Helix 13
13
A
308 316Right-handed alpha
Helix 14
14
A
316 339Right-handed alpha
Helix 15
15
A
339 352Right-handed alpha
Helix 16
16
A
354 359Right-handed 310
Helix 17
17
A
360 376Right-handed alpha
Helix 18
18
A
414 424Right-handed alpha
Helix 19
19
A
426 428Right-handed 310
Helix 20
20
A
438 444Right-handed alpha
Helix 21
21
A
469 503Right-handed alpha
Helix 22
22
A
523 531Right-handed alpha
Helix 23
23
A
534 570Right-handed alpha
Helix 24
24
A
579 610Right-handed alpha
Helix 25
25
A
629 637Right-handed alpha
Helix 26
26
A
638 641Right-handed 310
Helix 27
27
A
643 658Right-handed alpha
Helix 28
28
A
658 674Right-handed alpha
Helix 29
29
A
730 734Right-handed 310
Helix 30
30
A
738 755Right-handed alpha
Helix 31
31
A
756 771Right-handed alpha
Helix 32
32
A
772 774Right-handed 310
Helix 33
33
A
775 780Right-handed 310
Helix 34
34
A
788 790Right-handed 310
Helix 35
35
A
802 815Right-handed alpha
Helix 36
36
A
855 866Right-handed alpha
Helix 37
37
A
867 876Right-handed alpha
Helix 38
38
A
876 887Right-handed alpha
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There are 10 sheets in PDB entry 3SUP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 11first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
26 31anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
36 40first strand
Strand 2
A
56 61anti-parallel
Strand 3
A
49 51anti-parallel
Strand 4
A
378 379parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 191first strand
Strand 2
A
145 151parallel
Strand 3
A
135 140anti-parallel
Strand 4
A
110 116anti-parallel
Strand 5
A
212 214parallel
Strand 6
A
269 270parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
153 154first strand
Strand 2
A
157 158anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
248 252first strand
Strand 2
A
261 265anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
402 403first strand
Strand 2
A
700 704anti-parallel
Strand 3
A
707 715anti-parallel
Strand 4
A
683 689anti-parallel
Strand 5
A
407 412anti-parallel
Strand 6
A
624 628anti-parallel
Strand 7
A
617 621anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
402 403first strand
Strand 2
A
700 704anti-parallel
Strand 3
A
707 715anti-parallel
Strand 4
A
718 728anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
430 433first strand
Strand 2
A
461 463anti-parallel
Strand 3
A
455 457anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
781 784first strand
Strand 2
A
829 834anti-parallel
Strand 3
A
845 849anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
792 793first strand
Strand 2
A
796 797anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il