Analysis of interatomic Contacts of Structural Units in PDB entry:
3T79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T79 entry

There are 6 chains in PDB entry 3T79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
T 1 T 15
C
A 1 A 15
E
T 1 T 14
F
A 0 T 14
A
MET 1SER 402
D
MET 1SER 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 3T79. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
4 9Right-handed 310
Helix 2
2
A
12 31Right-handed alpha
Helix 3
3
A
46 57Right-handed alpha
Helix 4
4
A
57 63Right-handed alpha
Helix 5
5
A
64 77Right-handed alpha
Helix 6
6
A
81 101Right-handed alpha
Helix 7
7
A
106 119Right-handed alpha
Helix 8
8
A
132 150Right-handed alpha
Helix 9
9
A
152 159Right-handed alpha
Helix 10
10
A
160 164Right-handed 310
Helix 11
11
A
193 196Right-handed 310
Helix 12
12
A
197 211Right-handed alpha
Helix 13
13
A
223 228Right-handed alpha
Helix 14
14
A
244 259Right-handed alpha
Helix 15
15
A
264 270Right-handed alpha
Helix 16
16
A
303 311Right-handed alpha
Helix 17
17
A
331 356Right-handed alpha
Helix 18
18
A
359 368Right-handed 310
Helix 19
19
A
369 377Right-handed alpha
Helix 20
20
A
383 386Right-handed 310
Helix 21
21
A
387 393Right-handed alpha
Helix 22
22
D
4 9Right-handed 310
Helix 23
23
D
12 31Right-handed alpha
Helix 24
24
D
41 45Right-handed 310
Helix 25
25
D
46 57Right-handed alpha
Helix 26
26
D
57 63Right-handed alpha
Helix 27
27
D
64 77Right-handed alpha
Helix 28
28
D
81 101Right-handed alpha
Helix 29
29
D
102 119Right-handed alpha
Helix 30
30
D
132 150Right-handed alpha
Helix 31
31
D
152 159Right-handed alpha
Helix 32
32
D
160 164Right-handed 310
Helix 33
33
D
193 196Right-handed 310
Helix 34
34
D
197 210Right-handed alpha
Helix 35
35
D
223 228Right-handed alpha
Helix 36
36
D
244 260Right-handed alpha
Helix 37
37
D
264 270Right-handed alpha
Helix 38
38
D
303 311Right-handed alpha
Helix 39
39
D
331 356Right-handed alpha
Helix 40
40
D
359 368Right-handed 310
Helix 41
41
D
369 377Right-handed alpha
Helix 42
42
D
383 386Right-handed 310
Helix 43
43
D
387 393Right-handed alpha
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There are 3 sheets in PDB entry 3T79. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
165 169first strand
Strand 2
A
174 179anti-parallel
Strand 3
A
185 187anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
212 213first strand
Strand 2
A
217 218anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
165 169first strand
Strand 2
D
174 179anti-parallel
Strand 3
D
185 187anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il