Analysis of interatomic Contacts of Structural Units in PDB entry:
3TG1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TG1 entry

There are 2 chains in PDB entry 3TG1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5PRO 352
B
 LYS 148SER 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 3TG1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 78Right-handed alpha
Helix 2
2
A
112 120Right-handed alpha
Helix 3
3
A
123 144Right-handed alpha
Helix 4
4
A
152 154Right-handed 310
Helix 5
5
A
184 188Right-handed 310
Helix 6
6
A
203 219Right-handed alpha
Helix 7
7
A
228 240Right-handed alpha
Helix 8
8
A
246 250Right-handed 310
Helix 9
9
A
253 262Right-handed alpha
Helix 10
10
A
269 274Right-handed alpha
Helix 11
11
A
278 289Right-handed alpha
Helix 12
12
A
298 305Right-handed alpha
Helix 13
13
A
306 312Right-handed 310
Helix 14
14
A
313 317Right-handed 310
Helix 15
15
A
325 329Right-handed 310
Helix 16
16
A
333 347Right-handed alpha
Helix 17
17
B
151 160Right-handed alpha
Helix 18
18
B
179 186Right-handed alpha
Helix 19
19
B
198 206Right-handed alpha
Helix 20
20
B
211 216Right-handed alpha
Helix 21
21
B
250 261Right-handed alpha
Helix 22
22
B
271 277Right-handed alpha
Helix 23
23
B
280 284Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 3TG1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
20 21anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
16 17anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 31first strand
Strand 2
A
37 43anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
101 107anti-parallel
Strand 5
A
88 90anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
164 166anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
266 269parallel
Strand 3
B
233 236parallel
Strand 4
B
173 176parallel
Strand 5
B
192 193parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il