Analysis of interatomic Contacts of Structural Units in PDB entry:
3THX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3THX entry

There are 2 chains in PDB entry 3THX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12ILE 930
B
 LYS 217GLU 642
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 3THX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
47 57Right-handed alpha
Helix 3
3
A
82 95Right-handed alpha
Helix 4
4
A
131 136Right-handed alpha
Helix 5
5
A
184 195Right-handed alpha
Helix 6
6
A
207 221Right-handed alpha
Helix 7
7
A
228 233Right-handed 310
Helix 8
8
A
236 245Right-handed alpha
Helix 9
9
A
254 262Right-handed 310
Helix 10
10
A
263 278Right-handed alpha
Helix 11
11
A
279 286Right-handed 310
Helix 12
12
A
295 299Right-handed 310
Helix 13
13
A
303 310Right-handed alpha
Helix 14
14
A
325 331Right-handed alpha
Helix 15
15
A
335 348Right-handed alpha
Helix 16
16
A
352 368Right-handed alpha
Helix 17
17
A
369 378Right-handed alpha
Helix 18
18
A
380 384Right-handed 310
Helix 19
19
A
386 396Right-handed alpha
Helix 20
20
A
400 412Right-handed alpha
Helix 21
21
A
413 424Right-handed alpha
Helix 22
22
A
431 435Right-handed 310
Helix 23
23
A
436 456Right-handed alpha
Helix 24
24
A
461 465Right-handed 310
Helix 25
25
A
475 503Right-handed alpha
Helix 26
26
A
526 531Right-handed alpha
Helix 27
27
A
555 564Right-handed alpha
Helix 28
28
A
567 586Right-handed alpha
Helix 29
29
A
588 614Right-handed alpha
Helix 30
30
A
674 692Right-handed alpha
Helix 31
31
A
724 739Right-handed alpha
Helix 32
32
A
755 773Right-handed alpha
Helix 33
33
A
784 793Right-handed 310
Helix 34
34
A
826 834Right-handed alpha
Helix 35
35
A
837 851Right-handed alpha
Helix 36
36
A
874 893Right-handed alpha
Helix 37
37
A
894 899Right-handed 310
Helix 38
38
A
900 918Right-handed alpha
Helix 39
39
A
920 929Right-handed alpha
Helix 40
40
B
221 232Right-handed alpha
Helix 41
41
B
251 262Right-handed alpha
Helix 42
42
B
280 292Right-handed alpha
Helix 43
43
B
303 308Right-handed alpha
Helix 44
44
B
402 413Right-handed alpha
Helix 45
45
B
424 437Right-handed alpha
Helix 46
46
B
450 454Right-handed 310
Helix 47
47
B
455 467Right-handed alpha
Helix 48
48
B
487 504Right-handed alpha
Helix 49
49
B
505 511Right-handed 310
Helix 50
50
B
512 514Right-handed 310
Helix 51
51
B
529 536Right-handed alpha
Helix 52
52
B
550 556Right-handed alpha
Helix 53
53
B
560 573Right-handed alpha
Helix 54
54
B
577 593Right-handed alpha
Helix 55
55
B
597 605Right-handed alpha
Helix 56
56
B
611 621Right-handed alpha
Helix 57
57
B
625 653Right-handed alpha
Helix 58
58
B
656 664Right-handed alpha
Helix 59
59
B
664 670Right-handed alpha
Helix 60
60
B
673 678Right-handed alpha
Helix 61
61
B
681 688Right-handed alpha
Helix 62
62
B
696 699Right-handed 310
Helix 63
63
B
700 729Right-handed alpha
Helix 64
64
B
751 755Right-handed 310
Helix 65
65
B
773 806Right-handed alpha
Helix 66
66
B
808 833Right-handed alpha
Helix 67
67
B
855 862Right-handed alpha
Helix 68
68
B
890 909Right-handed alpha
Helix 69
69
B
942 957Right-handed alpha
Helix 70
70
B
973 991Right-handed alpha
Helix 71
71
B
1002 1006Right-handed 310
Helix 72
72
B
1007 1012Right-handed alpha
Helix 73
73
B
1060 1065Right-handed alpha
Helix 74
74
B
1070 1103Right-handed alpha
Helix 75
75
B
1106 1120Right-handed alpha
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There are 11 sheets in PDB entry 3THX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
42 46anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
99 105parallel
Strand 6
A
117 123anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 227first strand
Strand 2
A
198 202parallel
Strand 3
A
147 152parallel
Strand 4
A
160 167anti-parallel
Strand 5
A
172 179anti-parallel
Strand 6
A
290 293parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
707 711parallel
Strand 3
A
744 748parallel
Strand 4
A
777 782parallel
Strand 5
A
664 668parallel
Strand 6
A
797 807parallel
Strand 7
A
810 819anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 515first strand
Strand 2
A
521 525anti-parallel
Strand 3
A
549 552anti-parallel
Strand 4
A
540 543anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 625first strand
Strand 2
A
697 703parallel
Strand 3
A
631 637anti-parallel
Strand 4
A
653 658anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 268first strand
Strand 2
B
271 277anti-parallel
Strand 3
B
246 250anti-parallel
Strand 4
B
238 242anti-parallel
Strand 5
B
295 300parallel
Strand 6
B
319 325anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 339first strand
Strand 2
B
346 347anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 449first strand
Strand 2
B
416 420parallel
Strand 3
B
359 365parallel
Strand 4
B
377 384anti-parallel
Strand 5
B
391 398anti-parallel
Strand 6
B
516 518parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 528first strand
Strand 2
B
925 929parallel
Strand 3
B
962 966parallel
Strand 4
B
995 999parallel
Strand 5
B
882 886parallel
Strand 6
B
1016 1024parallel
Strand 7
B
1046 1052anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
736 738first strand
Strand 2
B
741 748anti-parallel
Strand 3
B
768 772anti-parallel
Strand 4
B
760 764anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
841 843first strand
Strand 2
B
917 921parallel
Strand 3
B
847 853anti-parallel
Strand 4
B
871 875anti-parallel
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