Analysis of interatomic Contacts of Structural Units in PDB entry:
3TJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TJJ entry

There are 10 chains in PDB entry 3TJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 76VAL 123
A
 PRO 125GLY 242
B
 LEU 76VAL 123
B
 PRO 125GLY 242
C
 LEU 76VAL 123
C
 PRO 125GLY 242
D
 LEU 76VAL 123
D
 PRO 125GLY 242
E
 LEU 76VAL 123
E
 PRO 125GLY 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3TJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
104 107Right-handed 310
Helix 2
2
A
125 134Right-handed alpha
Helix 3
3
A
134 140Right-handed alpha
Helix 4
4
A
152 161Right-handed alpha
Helix 5
5
A
163 167Right-handed 310
Helix 6
6
A
182 188Right-handed alpha
Helix 7
7
A
224 242Right-handed alpha
Helix 8
8
B
104 107Right-handed 310
Helix 9
9
B
125 134Right-handed alpha
Helix 10
10
B
135 140Right-handed alpha
Helix 11
11
B
152 161Right-handed alpha
Helix 12
12
B
163 167Right-handed 310
Helix 13
13
B
182 188Right-handed alpha
Helix 14
14
B
224 242Right-handed alpha
Helix 15
15
C
104 107Right-handed 310
Helix 16
16
C
125 134Right-handed alpha
Helix 17
17
C
134 140Right-handed alpha
Helix 18
18
C
152 161Right-handed alpha
Helix 19
19
C
163 167Right-handed 310
Helix 20
20
C
182 188Right-handed alpha
Helix 21
21
C
224 241Right-handed alpha
Helix 22
22
D
104 107Right-handed 310
Helix 23
23
D
125 134Right-handed alpha
Helix 24
24
D
134 140Right-handed alpha
Helix 25
25
D
152 161Right-handed alpha
Helix 26
26
D
163 167Right-handed 310
Helix 27
27
D
182 188Right-handed alpha
Helix 28
28
D
224 241Right-handed alpha
Helix 29
29
E
104 107Right-handed 310
Helix 30
30
E
125 134Right-handed alpha
Helix 31
31
E
134 140Right-handed alpha
Helix 32
32
E
152 161Right-handed alpha
Helix 33
33
E
163 167Right-handed 310
Helix 34
34
E
182 188Right-handed alpha
Helix 35
35
E
224 242Right-handed alpha
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There are 3 sheets in PDB entry 3TJJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 102first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
176 178anti-parallel
Strand 4
A
143 149parallel
Strand 5
A
110 115parallel
Strand 6
A
200 205anti-parallel
Strand 7
A
211 217anti-parallel
Strand 8
B
211 217anti-parallel
Strand 9
B
200 205anti-parallel
Strand 10
B
110 115anti-parallel
Strand 11
B
143 149parallel
Strand 12
B
176 178parallel
Strand 13
B
89 94anti-parallel
Strand 14
B
97 102anti-parallel
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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 102first strand
Strand 2
C
89 94anti-parallel
Strand 3
C
176 178anti-parallel
Strand 4
C
143 149parallel
Strand 5
C
110 115parallel
Strand 6
C
200 205anti-parallel
Strand 7
C
211 217anti-parallel
Strand 8
D
211 217anti-parallel
Strand 9
D
200 205anti-parallel
Strand 10
D
110 115anti-parallel
Strand 11
D
143 149parallel
Strand 12
D
176 178parallel
Strand 13
D
89 94anti-parallel
Strand 14
D
97 102anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
97 102first strand
Strand 2
E
89 94anti-parallel
Strand 3
E
176 178anti-parallel
Strand 4
E
143 149parallel
Strand 5
E
110 115parallel
Strand 6
E
200 205anti-parallel
Strand 7
E
211 217anti-parallel
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