Analysis of interatomic Contacts of Structural Units in PDB entry:
3TMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TMC entry

There are 2 chains in PDB entry 3TMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2GLY 307
B
 ASP 2GLY 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 3TMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 11Right-handed 310
Helix 2
2
A
40 48Right-handed 310
Helix 3
3
A
61 78Right-handed alpha
Helix 4
4
A
84 106Right-handed alpha
Helix 5
5
A
109 130Right-handed alpha
Helix 6
6
A
132 139Right-handed alpha
Helix 7
7
A
146 166Right-handed alpha
Helix 8
8
A
169 182Right-handed alpha
Helix 9
9
A
184 188Right-handed 310
Helix 10
10
A
197 201Right-handed 310
Helix 11
11
A
202 211Right-handed alpha
Helix 12
12
A
211 221Right-handed alpha
Helix 13
13
A
227 237Right-handed alpha
Helix 14
14
A
250 254Right-handed 310
Helix 15
15
A
255 274Right-handed alpha
Helix 16
16
A
280 289Right-handed alpha
Helix 17
17
A
294 307Right-handed alpha
Helix 18
18
B
9 11Right-handed 310
Helix 19
19
B
40 48Right-handed 310
Helix 20
20
B
61 78Right-handed alpha
Helix 21
21
B
84 106Right-handed alpha
Helix 22
22
B
109 130Right-handed alpha
Helix 23
23
B
132 139Right-handed alpha
Helix 24
24
B
146 166Right-handed alpha
Helix 25
25
B
169 183Right-handed alpha
Helix 26
26
B
184 188Right-handed 310
Helix 27
27
B
197 201Right-handed 310
Helix 28
28
B
202 221Right-handed alpha
Helix 29
29
B
227 237Right-handed alpha
Helix 30
30
B
250 254Right-handed 310
Helix 31
31
B
255 274Right-handed alpha
Helix 32
32
B
277 289Right-handed alpha
Helix 33
33
B
294 307Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3TMC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
54 58anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
28 33anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
54 58anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
28 33anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il