Analysis of interatomic Contacts of Structural Units in PDB entry:
3UDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UDB entry

There are 5 chains in PDB entry 3UDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 12VAL 317
B
 LEU 12VAL 317
C
 LEU 12VAL 317
D
 LEU 12VAL 317
E
 PRO 13GLU 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 3UDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 71Right-handed alpha
Helix 2
2
A
101 109Right-handed alpha
Helix 3
3
A
113 134Right-handed alpha
Helix 4
4
A
142 146Right-handed 310
Helix 5
5
A
179 183Right-handed 310
Helix 6
6
A
184 190Right-handed alpha
Helix 7
7
A
194 213Right-handed alpha
Helix 8
8
A
226 236Right-handed alpha
Helix 9
9
A
247 258Right-handed alpha
Helix 10
10
A
267 272Right-handed alpha
Helix 11
11
A
274 279Right-handed alpha
Helix 12
12
A
304 316Right-handed alpha
Helix 13
13
B
59 71Right-handed alpha
Helix 14
14
B
101 110Right-handed alpha
Helix 15
15
B
113 134Right-handed alpha
Helix 16
16
B
142 146Right-handed 310
Helix 17
17
B
184 190Right-handed alpha
Helix 18
18
B
194 213Right-handed alpha
Helix 19
19
B
225 235Right-handed alpha
Helix 20
20
B
247 258Right-handed alpha
Helix 21
21
B
267 273Right-handed alpha
Helix 22
22
B
274 279Right-handed alpha
Helix 23
23
B
304 316Right-handed alpha
Helix 24
24
C
55 58Right-handed 310
Helix 25
25
C
59 71Right-handed alpha
Helix 26
26
C
101 110Right-handed alpha
Helix 27
27
C
113 134Right-handed alpha
Helix 28
28
C
142 146Right-handed 310
Helix 29
29
C
184 190Right-handed alpha
Helix 30
30
C
194 213Right-handed alpha
Helix 31
31
C
225 235Right-handed alpha
Helix 32
32
C
247 258Right-handed alpha
Helix 33
33
C
261 265Right-handed 310
Helix 34
34
C
267 272Right-handed alpha
Helix 35
35
C
274 279Right-handed alpha
Helix 36
36
C
304 317Right-handed alpha
Helix 37
37
D
59 71Right-handed alpha
Helix 38
38
D
101 109Right-handed alpha
Helix 39
39
D
113 135Right-handed alpha
Helix 40
40
D
179 183Right-handed 310
Helix 41
41
D
184 190Right-handed alpha
Helix 42
42
D
194 213Right-handed alpha
Helix 43
43
D
225 235Right-handed alpha
Helix 44
44
D
247 258Right-handed alpha
Helix 45
45
D
267 272Right-handed alpha
Helix 46
46
D
274 279Right-handed alpha
Helix 47
47
D
296 300Right-handed 310
Helix 48
48
D
304 317Right-handed alpha
Helix 49
49
E
61 71Right-handed alpha
Helix 50
50
E
101 110Right-handed alpha
Helix 51
51
E
113 134Right-handed alpha
Helix 52
52
E
195 213Right-handed alpha
Helix 53
53
E
225 235Right-handed alpha
Helix 54
54
E
247 258Right-handed alpha
Helix 55
55
E
267 272Right-handed alpha
Helix 56
56
E
274 279Right-handed alpha
Helix 57
57
E
282 287Right-handed alpha
Helix 58
58
E
306 315Right-handed alpha
Helix 59
59
F
59 71Right-handed alpha
Helix 60
60
F
101 109Right-handed alpha
Helix 61
61
F
113 134Right-handed alpha
Helix 62
62
F
142 146Right-handed 310
Helix 63
63
F
179 183Right-handed 310
Helix 64
64
F
184 190Right-handed alpha
Helix 65
65
F
194 213Right-handed alpha
Helix 66
66
F
225 235Right-handed alpha
Helix 67
67
F
247 258Right-handed alpha
Helix 68
68
F
261 265Right-handed 310
Helix 69
69
F
267 272Right-handed alpha
Helix 70
70
F
274 279Right-handed alpha
Helix 71
71
F
304 315Right-handed alpha
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There are 12 sheets in PDB entry 3UDB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 26first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
45 53anti-parallel
Strand 4
A
89 95anti-parallel
Strand 5
A
80 86anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
156 157anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 27first strand
Strand 2
B
35 40anti-parallel
Strand 3
B
45 53anti-parallel
Strand 4
B
89 95anti-parallel
Strand 5
B
80 85anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
156 157anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 27first strand
Strand 2
C
35 40anti-parallel
Strand 3
C
45 53anti-parallel
Strand 4
C
89 95anti-parallel
Strand 5
C
80 85anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 148first strand
Strand 2
C
156 157anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 26first strand
Strand 2
D
36 40anti-parallel
Strand 3
D
45 53anti-parallel
Strand 4
D
89 95anti-parallel
Strand 5
D
80 86anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
147 148first strand
Strand 2
D
156 157anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 26first strand
Strand 2
E
36 40anti-parallel
Strand 3
E
45 53anti-parallel
Strand 4
E
89 95anti-parallel
Strand 5
E
80 85anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
147 148first strand
Strand 2
E
156 157anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
21 25first strand
Strand 2
F
36 40anti-parallel
Strand 3
F
45 53anti-parallel
Strand 4
F
89 95anti-parallel
Strand 5
F
80 85anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
147 148first strand
Strand 2
F
156 157anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il