Analysis of interatomic Contacts of Structural Units in PDB entry:
3UE8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UE8 entry

There are 2 chains in PDB entry 3UE8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 427
B
 MET 1LEU 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3UE8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 13Right-handed alpha
Helix 2
2
A
42 46Right-handed 310
Helix 3
3
A
64 73Right-handed alpha
Helix 4
4
A
80 96Right-handed alpha
Helix 5
5
A
97 102Right-handed 310
Helix 6
6
A
103 107Right-handed 310
Helix 7
7
A
116 129Right-handed alpha
Helix 8
8
A
142 150Right-handed alpha
Helix 9
9
A
167 176Right-handed alpha
Helix 10
10
A
177 178Right-handed 310
Helix 11
11
A
179 184Right-handed 310
Helix 12
12
A
209 223Right-handed alpha
Helix 13
13
A
278 292Right-handed alpha
Helix 14
14
A
296 341Right-handed alpha
Helix 15
15
A
367 372Right-handed alpha
Helix 16
16
A
374 377Right-handed 310
Helix 17
17
A
385 388Right-handed 310
Helix 18
18
A
406 426Right-handed alpha
Helix 19
19
B
3 7Right-handed 310
Helix 20
20
B
8 14Right-handed alpha
Helix 21
21
B
42 46Right-handed 310
Helix 22
22
B
64 73Right-handed alpha
Helix 23
23
B
80 96Right-handed alpha
Helix 24
24
B
97 102Right-handed 310
Helix 25
25
B
115 129Right-handed alpha
Helix 26
26
B
142 150Right-handed alpha
Helix 27
27
B
167 176Right-handed alpha
Helix 28
28
B
209 223Right-handed alpha
Helix 29
29
B
245 250Right-handed alpha
Helix 30
30
B
278 292Right-handed alpha
Helix 31
31
B
296 341Right-handed alpha
Helix 32
32
B
366 372Right-handed alpha
Helix 33
33
B
374 378Right-handed 310
Helix 34
34
B
383 388Right-handed 310
Helix 35
35
B
406 425Right-handed alpha
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There are 7 sheets in PDB entry 3UE8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
48 55anti-parallel
Strand 3
B
48 55anti-parallel
Strand 4
B
58 63anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 114first strand
Strand 2
A
272 277anti-parallel
Strand 3
A
255 260anti-parallel
Strand 4
A
226 230parallel
Strand 5
A
193 196parallel
Strand 6
A
134 137parallel
Strand 7
A
155 158parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 347first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
397 401anti-parallel
Strand 4
A
382 383anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
B
34 35parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 114first strand
Strand 2
B
272 277anti-parallel
Strand 3
B
255 260anti-parallel
Strand 4
B
226 230parallel
Strand 5
B
193 196parallel
Strand 6
B
134 137parallel
Strand 7
B
155 158parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
165 166anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 347first strand
Strand 2
B
355 360anti-parallel
Strand 3
B
397 401anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il