Analysis of interatomic Contacts of Structural Units in PDB entry:
3UGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UGV entry

There are 4 chains in PDB entry 3UGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 4VAL 366
B
THR 4VAL 366
C
THR 4VAL 366
D
THR 4ARG 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are125 helices in PDB entry 3UGV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
56 58Right-handed 310
Helix 2
2
A
59 75Right-handed alpha
Helix 3
3
A
80 92Right-handed alpha
Helix 4
4
A
93 96Right-handed 310
Helix 5
5
A
99 120Right-handed alpha
Helix 6
6
A
123 128Right-handed alpha
Helix 7
7
A
147 161Right-handed alpha
Helix 8
8
A
178 194Right-handed alpha
Helix 9
9
A
208 220Right-handed alpha
Helix 10
10
A
235 246Right-handed alpha
Helix 11
11
A
258 268Right-handed alpha
Helix 12
12
A
277 282Right-handed alpha
Helix 13
13
A
282 298Right-handed alpha
Helix 14
14
A
306 315Right-handed alpha
Helix 15
15
A
329 333Right-handed 310
Helix 16
16
A
357 363Right-handed alpha
Helix 17
17
B
56 58Right-handed 310
Helix 18
18
B
59 75Right-handed alpha
Helix 19
19
B
80 92Right-handed alpha
Helix 20
20
B
93 96Right-handed 310
Helix 21
21
B
99 120Right-handed alpha
Helix 22
22
B
123 128Right-handed alpha
Helix 23
23
B
147 161Right-handed alpha
Helix 24
24
B
178 194Right-handed alpha
Helix 25
25
B
208 219Right-handed alpha
Helix 26
26
B
235 246Right-handed alpha
Helix 27
27
B
258 268Right-handed alpha
Helix 28
28
B
282 298Right-handed alpha
Helix 29
29
B
306 315Right-handed alpha
Helix 30
30
B
329 333Right-handed 310
Helix 31
31
B
357 365Right-handed alpha
Helix 32
32
C
56 58Right-handed 310
Helix 33
33
C
59 75Right-handed alpha
Helix 34
34
C
80 93Right-handed alpha
Helix 35
35
C
94 96Right-handed 310
Helix 36
36
C
99 120Right-handed alpha
Helix 37
37
C
123 128Right-handed alpha
Helix 38
38
C
147 162Right-handed alpha
Helix 39
39
C
178 194Right-handed alpha
Helix 40
40
C
208 219Right-handed alpha
Helix 41
41
C
235 246Right-handed alpha
Helix 42
42
C
258 268Right-handed alpha
Helix 43
43
C
282 298Right-handed alpha
Helix 44
44
C
306 315Right-handed alpha
Helix 45
45
C
329 333Right-handed 310
Helix 46
46
C
357 365Right-handed alpha
Helix 47
47
D
56 58Right-handed 310
Helix 48
48
D
59 75Right-handed alpha
Helix 49
49
D
80 92Right-handed alpha
Helix 50
50
D
93 96Right-handed 310
Helix 51
51
D
99 120Right-handed alpha
Helix 52
52
D
123 128Right-handed alpha
Helix 53
53
D
147 162Right-handed alpha
Helix 54
54
D
178 194Right-handed alpha
Helix 55
55
D
208 220Right-handed alpha
Helix 56
56
D
235 246Right-handed alpha
Helix 57
57
D
258 268Right-handed alpha
Helix 58
58
D
277 282Right-handed alpha
Helix 59
59
D
282 298Right-handed alpha
Helix 60
60
D
306 315Right-handed alpha
Helix 61
61
D
329 333Right-handed 310
Helix 62
62
D
357 365Right-handed alpha
Helix 63
63
E
56 58Right-handed 310
Helix 64
64
E
59 75Right-handed alpha
Helix 65
65
E
80 92Right-handed alpha
Helix 66
66
E
93 96Right-handed 310
Helix 67
67
E
99 119Right-handed alpha
Helix 68
68
E
123 128Right-handed alpha
Helix 69
69
E
147 161Right-handed alpha
Helix 70
70
E
178 194Right-handed alpha
Helix 71
71
E
208 219Right-handed alpha
Helix 72
72
E
235 246Right-handed alpha
Helix 73
73
E
258 268Right-handed alpha
Helix 74
74
E
277 282Right-handed alpha
Helix 75
75
E
282 298Right-handed alpha
Helix 76
76
E
306 315Right-handed alpha
Helix 77
77
E
329 333Right-handed 310
Helix 78
78
E
357 365Right-handed alpha
Helix 79
79
F
56 58Right-handed 310
Helix 80
80
F
59 75Right-handed alpha
Helix 81
81
F
80 92Right-handed alpha
Helix 82
82
F
93 96Right-handed 310
Helix 83
83
F
99 120Right-handed alpha
Helix 84
84
F
123 128Right-handed alpha
Helix 85
85
F
147 161Right-handed alpha
Helix 86
86
F
178 194Right-handed alpha
Helix 87
87
F
208 220Right-handed alpha
Helix 88
88
F
235 246Right-handed alpha
Helix 89
89
F
258 268Right-handed alpha
Helix 90
90
F
277 282Right-handed alpha
Helix 91
91
F
282 298Right-handed alpha
Helix 92
92
F
306 315Right-handed alpha
Helix 93
93
F
329 333Right-handed 310
Helix 94
94
F
357 365Right-handed alpha
Helix 95
95
G
56 58Right-handed 310
Helix 96
96
G
59 75Right-handed alpha
Helix 97
97
G
80 92Right-handed alpha
Helix 98
98
G
93 96Right-handed 310
Helix 99
99
G
99 120Right-handed alpha
Helix 100
100
G
123 128Right-handed alpha
Helix 101
101
G
147 161Right-handed alpha
Helix 102
102
G
178 194Right-handed alpha
Helix 103
103
G
208 220Right-handed alpha
Helix 104
104
G
235 246Right-handed alpha
Helix 105
105
G
258 268Right-handed alpha
Helix 106
106
G
277 282Right-handed alpha
Helix 107
107
G
282 298Right-handed alpha
Helix 108
108
G
306 315Right-handed alpha
Helix 109
109
G
329 333Right-handed 310
Helix 110
110
G
357 365Right-handed alpha
Helix 111
111
H
56 58Right-handed 310
Helix 112
112
H
59 75Right-handed alpha
Helix 113
113
H
80 92Right-handed alpha
Helix 114
114
H
93 96Right-handed 310
Helix 115
115
H
99 120Right-handed alpha
Helix 116
116
H
123 128Right-handed alpha
Helix 117
117
H
147 161Right-handed alpha
Helix 118
118
H
178 194Right-handed alpha
Helix 119
119
H
208 220Right-handed alpha
Helix 120
120
H
235 246Right-handed alpha
Helix 121
121
H
258 268Right-handed alpha
Helix 122
122
H
282 298Right-handed alpha
Helix 123
123
H
306 315Right-handed alpha
Helix 124
124
H
329 333Right-handed 310
Helix 125
125
H
357 365Right-handed alpha
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There are 24 sheets in PDB entry 3UGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
7 24first strand
Strand 2
A
29 42anti-parallel
Strand 3
A
48 52anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
323 325first strand
Strand 2
A
134 139parallel
Strand 3
A
343 345anti-parallel
Strand 4
A
339 340anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 173first strand
Strand 2
A
198 202parallel
Strand 3
A
226 228parallel
Strand 4
A
250 252parallel
Strand 5
A
273 274parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
7 24first strand
Strand 2
B
29 42anti-parallel
Strand 3
B
47 52anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
323 325first strand
Strand 2
B
134 139parallel
Strand 3
B
343 345anti-parallel
Strand 4
B
338 340anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
169 173first strand
Strand 2
B
198 202parallel
Strand 3
B
226 228parallel
Strand 4
B
250 252parallel
Strand 5
B
273 274parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
7 24first strand
Strand 2
C
29 42anti-parallel
Strand 3
C
48 52anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
323 325first strand
Strand 2
C
134 139parallel
Strand 3
C
343 345anti-parallel
Strand 4
C
338 340anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
169 173first strand
Strand 2
C
198 202parallel
Strand 3
C
226 228parallel
Strand 4
C
250 252parallel
Strand 5
C
273 274parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
7 24first strand
Strand 2
D
29 42anti-parallel
Strand 3
D
48 52anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
323 325first strand
Strand 2
D
134 139parallel
Strand 3
D
343 345anti-parallel
Strand 4
D
339 340anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
169 173first strand
Strand 2
D
198 202parallel
Strand 3
D
226 228parallel
Strand 4
D
250 252parallel
Strand 5
D
273 274parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
7 24first strand
Strand 2
E
29 42anti-parallel
Strand 3
E
47 52anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
323 325first strand
Strand 2
E
134 139parallel
Strand 3
E
343 345anti-parallel
Strand 4
E
339 340anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
169 173first strand
Strand 2
E
198 202parallel
Strand 3
E
226 228parallel
Strand 4
E
250 252parallel
Strand 5
E
273 274parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
7 24first strand
Strand 2
F
29 42anti-parallel
Strand 3
F
48 52anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
323 325first strand
Strand 2
F
134 139parallel
Strand 3
F
343 345anti-parallel
Strand 4
F
338 340anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
169 173first strand
Strand 2
F
198 202parallel
Strand 3
F
226 228parallel
Strand 4
F
250 252parallel
Strand 5
F
273 274parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
7 24first strand
Strand 2
G
29 42anti-parallel
Strand 3
G
48 52anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
323 325first strand
Strand 2
G
134 139parallel
Strand 3
G
343 345anti-parallel
Strand 4
G
338 340anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
169 173first strand
Strand 2
G
198 202parallel
Strand 3
G
226 228parallel
Strand 4
G
250 252parallel
Strand 5
G
273 274parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
7 24first strand
Strand 2
H
29 42anti-parallel
Strand 3
H
47 52anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
323 325first strand
Strand 2
H
134 139parallel
Strand 3
H
343 345anti-parallel
Strand 4
H
338 340anti-parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
169 173first strand
Strand 2
H
198 202parallel
Strand 3
H
226 228parallel
Strand 4
H
250 252parallel
Strand 5
H
273 274parallel
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