Analysis of interatomic Contacts of Structural Units in PDB entry:
3ULA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ULA entry

There are 4 chains in PDB entry 3ULA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 27PRO 302
B
GLN 19ASN 158
C
GLU 27PRO 302
D
GLN 19ASN 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3ULA. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
140 144Right-handed 310
Helix 2
2
A
168 174Right-handed 310
Helix 3
3
A
192 201Right-handed 310
Helix 4
4
A
269 279Right-handed alpha
Helix 5
5
A
295 299Right-handed 310
Helix 6
6
B
102 107Right-handed 310
Helix 7
7
C
140 144Right-handed 310
Helix 8
8
C
168 174Right-handed 310
Helix 9
9
C
192 201Right-handed 310
Helix 10
10
C
269 279Right-handed alpha
Helix 11
11
C
295 299Right-handed 310
Helix 12
12
D
102 107Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 3ULA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
31 33first strand
Strand 2
A
37 39anti-parallel
Strand 3
A
58 60parallel
Strand 4
A
82 84parallel
Strand 5
A
106 108parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
68 69first strand
Strand 2
A
92 93parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
130 132first strand
Strand 2
A
154 156parallel
Strand 3
A
179 181parallel
Strand 4
A
207 209parallel
Strand 5
A
230 232parallel
Strand 6
A
254 256parallel
Strand 7
A
283 284parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
189 190first strand
Strand 2
A
217 218parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
22 27first strand
Strand 2
B
30 35anti-parallel
Strand 3
B
150 154anti-parallel
Strand 4
B
131 139anti-parallel
Strand 5
B
75 81anti-parallel
Strand 6
B
90 93anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
22 27first strand
Strand 2
B
30 35anti-parallel
Strand 3
B
150 154anti-parallel
Strand 4
B
131 139anti-parallel
Strand 5
B
144 147anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
45 49first strand
Strand 2
B
57 65anti-parallel
Strand 3
B
113 121anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
31 33first strand
Strand 2
C
37 39anti-parallel
Strand 3
C
58 60parallel
Strand 4
C
82 84parallel
Strand 5
C
106 108parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
68 69first strand
Strand 2
C
92 93parallel
Back to list of sheets
Back to top of page

There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
130 132first strand
Strand 2
C
154 156parallel
Strand 3
C
179 181parallel
Strand 4
C
207 209parallel
Strand 5
C
230 232parallel
Strand 6
C
254 256parallel
Strand 7
C
283 284parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
189 190first strand
Strand 2
C
217 218parallel
Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
22 27first strand
Strand 2
D
30 35anti-parallel
Strand 3
D
150 154anti-parallel
Strand 4
D
131 139anti-parallel
Strand 5
D
75 81anti-parallel
Strand 6
D
90 93anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
22 27first strand
Strand 2
D
30 35anti-parallel
Strand 3
D
150 154anti-parallel
Strand 4
D
131 139anti-parallel
Strand 5
D
144 147anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
45 49first strand
Strand 2
D
57 65anti-parallel
Strand 3
D
113 121anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il