Analysis of interatomic Contacts of Structural Units in PDB entry:
3ULR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ULR entry

There are 3 chains in PDB entry 3ULR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 19LEU 147
B
PRO 483GLN 546
C
SER 563LEU 575
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3ULR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
22 33Right-handed alpha
Helix 2
2
A
37 41Right-handed 310
Helix 3
3
A
42 55Right-handed alpha
Helix 4
4
A
97 103Right-handed 310
Helix 5
5
A
106 118Right-handed alpha
Helix 6
6
A
121 125Right-handed 310
Helix 7
7
A
126 133Right-handed alpha
Helix 8
8
A
137 143Right-handed 310
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There are 2 sheets in PDB entry 3ULR. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
61 63first strand
Strand 2
A
69 71anti-parallel
Strand 3
A
76 77anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
533 538first strand
Strand 2
B
525 530anti-parallel
Strand 3
B
514 519anti-parallel
Strand 4
B
493 495anti-parallel
Strand 5
B
542 544anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il