Analysis of interatomic Contacts of Structural Units in PDB entry:
3UVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UVJ entry

There are 4 chains in PDB entry 3UVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 470	GLN 661
B	PRO 413	ASN 608
C	GLN 470	GLN 661
D	VAL 412	LYS 607

There are 20 helices in PDB entry 3UVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	489	497	Right-handed alpha
Helix 2	2	A	498	521	Right-handed alpha
Helix 3	3	A	544	561	Right-handed alpha
Helix 4	4	A	598	610	Right-handed alpha
Helix 5	5	A	619	627	Right-handed alpha
Helix 6	6	B	429	436	Right-handed alpha
Helix 7	7	B	439	462	Right-handed alpha
Helix 8	8	B	491	508	Right-handed alpha
Helix 9	9	B	544	556	Right-handed alpha
Helix 10	10	B	566	573	Right-handed alpha
Helix 11	11	C	489	497	Right-handed alpha
Helix 12	12	C	498	521	Right-handed alpha
Helix 13	13	C	544	561	Right-handed alpha
Helix 14	14	C	598	610	Right-handed alpha
Helix 15	15	C	619	627	Right-handed alpha
Helix 16	16	D	429	437	Right-handed alpha
Helix 17	17	D	439	462	Right-handed alpha
Helix 18	18	D	491	508	Right-handed alpha
Helix 19	19	D	544	556	Right-handed alpha
Helix 20	20	D	566	573	Right-handed alpha

There are 9 sheets in PDB entry 3UVJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	525	first strand
Strand 2	A	532	536	anti-parallel
Strand 3	A	471	487	anti-parallel
Strand 4	A	573	587	anti-parallel
Strand 5	A	593	597	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	525	first strand
Strand 2	A	532	536	anti-parallel
Strand 3	A	471	487	anti-parallel
Strand 4	A	573	587	anti-parallel
Strand 5	A	616	618	parallel
Strand 6	A	655	660	anti-parallel
Strand 7	A	632	636	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	472	first strand
Strand 2	B	479	483	anti-parallel
Strand 3	B	415	427	anti-parallel
Strand 4	B	519	533	anti-parallel
Strand 5	B	539	543	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	472	first strand
Strand 2	B	479	483	anti-parallel
Strand 3	B	415	427	anti-parallel
Strand 4	B	519	533	anti-parallel
Strand 5	B	562	565	parallel
Strand 6	B	599	606	anti-parallel
Strand 7	B	582	590	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	512	first strand
Strand 2	B	515	516	anti-parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	632	636	first strand
Strand 2	C	655	660	anti-parallel
Strand 3	C	616	618	anti-parallel
Strand 4	C	573	587	parallel
Strand 5	C	593	597	anti-parallel
Strand 6	C	523	525	parallel
Strand 7	C	532	536	anti-parallel
Strand 8	C	471	487	anti-parallel
Strand 9	C	573	587	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	470	472	first strand
Strand 2	D	479	483	anti-parallel
Strand 3	D	415	427	anti-parallel
Strand 4	D	519	533	anti-parallel
Strand 5	D	539	543	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	470	472	first strand
Strand 2	D	479	483	anti-parallel
Strand 3	D	415	427	anti-parallel
Strand 4	D	519	533	anti-parallel
Strand 5	D	562	565	parallel
Strand 6	D	599	606	anti-parallel
Strand 7	D	582	590	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	512	first strand
Strand 2	D	515	516	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UVJ