Analysis of interatomic Contacts of Structural Units in PDB entry:
3UY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UY8 entry

There are 2 chains in PDB entry 3UY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 2ILE 247
B
PRO 2GLN 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3UY8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
6 18Right-handed alpha
Helix 2
2
A
32 43Right-handed alpha
Helix 3
3
A
65 74Right-handed alpha
Helix 4
4
A
92 103Right-handed alpha
Helix 5
5
A
115 125Right-handed alpha
Helix 6
6
A
138 152Right-handed alpha
Helix 7
7
A
162 173Right-handed alpha
Helix 8
8
A
193 200Right-handed alpha
Helix 9
9
A
215 224Right-handed alpha
Helix 10
10
A
233 239Right-handed alpha
Helix 11
11
A
242 247Right-handed alpha
Helix 12
12
B
6 18Right-handed alpha
Helix 13
13
B
32 44Right-handed alpha
Helix 14
14
B
65 74Right-handed alpha
Helix 15
15
B
92 101Right-handed alpha
Helix 16
16
B
115 126Right-handed alpha
Helix 17
17
B
135 137Right-handed 310
Helix 18
18
B
138 151Right-handed alpha
Helix 19
19
B
162 172Right-handed alpha
Helix 20
20
B
193 199Right-handed alpha
Helix 21
21
B
215 225Right-handed alpha
Helix 22
22
B
233 239Right-handed alpha
Helix 23
23
B
242 248Right-handed alpha
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There are 2 sheets in PDB entry 3UY8. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 52first strand
Strand 2
A
79 83parallel
Strand 3
A
107 110parallel
Strand 4
A
129 133parallel
Strand 5
A
157 160parallel
Strand 6
A
176 180parallel
Strand 7
A
206 210parallel
Strand 8
A
229 232parallel
Strand 9
A
48 52parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 52first strand
Strand 2
B
79 83parallel
Strand 3
B
107 110parallel
Strand 4
B
129 133parallel
Strand 5
B
157 160parallel
Strand 6
B
176 180parallel
Strand 7
B
206 210parallel
Strand 8
B
229 232parallel
Strand 9
B
48 52parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il