Analysis of interatomic Contacts of Structural Units in PDB entry:
3UYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UYT entry

There are 4 chains in PDB entry 3UYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5LYS 294
B
 VAL 5LEU 293
C
 ARG 4LYS 294
D
 ARG 4LYS 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 3UYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 60Right-handed alpha
Helix 2
2
A
88 96Right-handed alpha
Helix 3
3
A
101 122Right-handed alpha
Helix 4
4
A
130 132Right-handed 310
Helix 5
5
A
138 143Right-handed 310
Helix 6
6
A
176 180Right-handed 310
Helix 7
7
A
181 186Right-handed alpha
Helix 8
8
A
191 209Right-handed alpha
Helix 9
9
A
220 235Right-handed alpha
Helix 10
10
A
236 241Right-handed alpha
Helix 11
11
A
246 257Right-handed alpha
Helix 12
12
A
265 280Right-handed alpha
Helix 13
13
A
288 293Right-handed 310
Helix 14
14
B
48 60Right-handed alpha
Helix 15
15
B
88 96Right-handed alpha
Helix 16
16
B
101 122Right-handed alpha
Helix 17
17
B
130 132Right-handed 310
Helix 18
18
B
138 142Right-handed 310
Helix 19
19
B
181 187Right-handed alpha
Helix 20
20
B
191 209Right-handed alpha
Helix 21
21
B
220 234Right-handed alpha
Helix 22
22
B
236 241Right-handed alpha
Helix 23
23
B
246 258Right-handed alpha
Helix 24
24
B
265 280Right-handed alpha
Helix 25
25
B
288 293Right-handed 310
Helix 26
26
C
48 60Right-handed alpha
Helix 27
27
C
88 96Right-handed alpha
Helix 28
28
C
101 122Right-handed alpha
Helix 29
29
C
130 132Right-handed 310
Helix 30
30
C
138 142Right-handed 310
Helix 31
31
C
181 186Right-handed alpha
Helix 32
32
C
191 209Right-handed alpha
Helix 33
33
C
222 235Right-handed alpha
Helix 34
34
C
236 241Right-handed alpha
Helix 35
35
C
245 258Right-handed alpha
Helix 36
36
C
265 281Right-handed alpha
Helix 37
37
C
288 293Right-handed 310
Helix 38
38
D
4 7Right-handed 310
Helix 39
39
D
48 60Right-handed alpha
Helix 40
40
D
88 96Right-handed alpha
Helix 41
41
D
101 122Right-handed alpha
Helix 42
42
D
130 132Right-handed 310
Helix 43
43
D
138 142Right-handed 310
Helix 44
44
D
176 180Right-handed 310
Helix 45
45
D
181 186Right-handed alpha
Helix 46
46
D
191 209Right-handed alpha
Helix 47
47
D
225 235Right-handed alpha
Helix 48
48
D
236 241Right-handed alpha
Helix 49
49
D
246 258Right-handed alpha
Helix 50
50
D
265 280Right-handed alpha
Helix 51
51
D
288 293Right-handed 310
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There are 13 sheets in PDB entry 3UYT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 17first strand
Strand 2
A
22 28anti-parallel
Strand 3
A
34 41anti-parallel
Strand 4
A
77 83anti-parallel
Strand 5
A
68 74anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
154 155anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
145 147anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
22 28anti-parallel
Strand 3
B
14 17anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
22 28anti-parallel
Strand 3
B
33 40anti-parallel
Strand 4
B
78 83anti-parallel
Strand 5
B
68 73anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
154 155anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
145 147anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 18first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
33 41anti-parallel
Strand 4
C
77 83anti-parallel
Strand 5
C
68 74anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 125first strand
Strand 2
C
154 155anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 136first strand
Strand 2
C
145 147anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 17first strand
Strand 2
D
22 28anti-parallel
Strand 3
D
33 41anti-parallel
Strand 4
D
77 83anti-parallel
Strand 5
D
68 74anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 125first strand
Strand 2
D
154 155anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 136first strand
Strand 2
D
145 147anti-parallel
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