Analysis of interatomic Contacts of Structural Units in PDB entry:
3V1W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V1W entry

There is 1 chain in PDB entry 3V1W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2GLU 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 3V1W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 30Right-handed alpha
Helix 2
2
A
44 65Right-handed alpha
Helix 3
3
A
80 88Right-handed alpha
Helix 4
4
A
111 124Right-handed alpha
Helix 5
5
A
132 142Right-handed alpha
Helix 6
6
A
157 171Right-handed alpha
Helix 7
7
A
181 189Right-handed alpha
Helix 8
8
A
214 225Right-handed alpha
Helix 9
9
A
234 236Right-handed 310
Helix 10
10
A
237 244Right-handed alpha
Helix 11
11
A
259 276Right-handed alpha
Helix 12
12
A
288 292Right-handed 310
Helix 13
13
A
295 304Right-handed alpha
Helix 14
14
A
335 350Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3V1W. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
70 76parallel
Strand 3
A
32 38parallel
Strand 4
A
94 99anti-parallel
Strand 5
A
102 105anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
176 179parallel
Strand 3
A
147 151parallel
Strand 4
A
195 198anti-parallel
Strand 5
A
206 207anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
284 287parallel
Strand 3
A
249 254parallel
Strand 4
A
311 316anti-parallel
Strand 5
A
322 324anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il