Analysis of interatomic Contacts of Structural Units in PDB entry:
3V4O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V4O entry

There are 2 chains in PDB entry 3V4O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 336TYR 569
B
VAL 2ARG 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3V4O. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
361 376Right-handed alpha
Helix 2
2
A
387 401Right-handed alpha
Helix 3
3
A
435 439Right-handed 310
Helix 4
4
A
442 452Right-handed alpha
Helix 5
5
A
509 516Right-handed alpha
Helix 6
6
A
524 537Right-handed alpha
Helix 7
7
A
538 543Right-handed 310
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There are 3 sheets in PDB entry 3V4O. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
379 384first strand
Strand 2
A
343 349parallel
Strand 3
A
407 413parallel
Strand 4
A
456 462parallel
Strand 5
A
486 490parallel
Strand 6
A
549 552anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
416 419first strand
Strand 2
A
422 425anti-parallel
Strand 3
A
440 441anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
499 500first strand
Strand 2
B
3 4anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il