Analysis of interatomic Contacts of Structural Units in PDB entry:
3V4R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V4R entry

There are 4 chains in PDB entry 3V4R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LYS 590
B
 ASP 3ASN 589
C
 A 2 T 8
D
 A 2 T 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 3V4R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
44 57Right-handed alpha
Helix 3
3
A
66 81Right-handed alpha
Helix 4
4
A
116 133Right-handed alpha
Helix 5
5
A
142 146Right-handed 310
Helix 6
6
A
150 157Right-handed alpha
Helix 7
7
A
168 178Right-handed alpha
Helix 8
8
A
255 276Right-handed alpha
Helix 9
9
A
279 300Right-handed alpha
Helix 10
10
A
305 308Right-handed 310
Helix 11
11
A
309 314Right-handed alpha
Helix 12
12
A
324 329Right-handed 310
Helix 13
13
A
339 364Right-handed alpha
Helix 14
14
A
368 374Right-handed 310
Helix 15
15
A
378 384Right-handed alpha
Helix 16
16
A
397 404Right-handed alpha
Helix 17
17
A
429 444Right-handed alpha
Helix 18
18
A
454 469Right-handed alpha
Helix 19
19
A
482 494Right-handed alpha
Helix 20
20
A
526 529Right-handed 310
Helix 21
21
A
530 539Right-handed alpha
Helix 22
22
A
540 542Right-handed 310
Helix 23
23
A
557 581Right-handed alpha
Helix 24
24
B
16 30Right-handed alpha
Helix 25
25
B
44 57Right-handed alpha
Helix 26
26
B
66 81Right-handed alpha
Helix 27
27
B
116 133Right-handed alpha
Helix 28
28
B
142 146Right-handed 310
Helix 29
29
B
150 158Right-handed alpha
Helix 30
30
B
168 179Right-handed alpha
Helix 31
31
B
257 277Right-handed alpha
Helix 32
32
B
279 300Right-handed alpha
Helix 33
33
B
305 308Right-handed 310
Helix 34
34
B
309 314Right-handed alpha
Helix 35
35
B
324 329Right-handed 310
Helix 36
36
B
339 364Right-handed alpha
Helix 37
37
B
368 374Right-handed 310
Helix 38
38
B
378 384Right-handed alpha
Helix 39
39
B
397 404Right-handed alpha
Helix 40
40
B
429 444Right-handed alpha
Helix 41
41
B
454 469Right-handed alpha
Helix 42
42
B
480 494Right-handed alpha
Helix 43
43
B
526 529Right-handed 310
Helix 44
44
B
530 539Right-handed alpha
Helix 45
45
B
540 542Right-handed 310
Helix 46
46
B
557 581Right-handed alpha
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There are 13 sheets in PDB entry 3V4R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
136 140parallel
Strand 3
A
60 63parallel
Strand 4
A
334 338parallel
Strand 5
A
388 393parallel
Strand 6
A
34 39parallel
Strand 7
A
408 410parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
112 115anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
107 109anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
240 243anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
192 195parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
210 216anti-parallel
Strand 5
A
221 228anti-parallel
Strand 6
A
236 238anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 425first strand
Strand 2
A
548 552parallel
Strand 3
A
514 520parallel
Strand 4
A
447 451parallel
Strand 5
A
498 500parallel
Strand 6
A
472 474parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 89first strand
Strand 2
B
136 140parallel
Strand 3
B
60 63parallel
Strand 4
B
334 338parallel
Strand 5
B
388 393parallel
Strand 6
B
35 39parallel
Strand 7
B
408 410parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 97first strand
Strand 2
B
112 115anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
107 109anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 162first strand
Strand 2
B
240 243anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
192 193parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
210 217anti-parallel
Strand 3
B
220 228anti-parallel
Strand 4
B
236 238anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 425first strand
Strand 2
B
548 552parallel
Strand 3
B
514 520parallel
Strand 4
B
447 451parallel
Strand 5
B
498 501parallel
Strand 6
B
472 474parallel
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