Analysis of interatomic Contacts of Structural Units in PDB entry:
3V96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V96 entry

There are 2 chains in PDB entry 3V96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 1SER 178
B
MET 105GLY 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3V96. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
7 15Right-handed alpha
Helix 2
2
A
66 70Right-handed 310
Helix 3
3
A
106 108Right-handed 310
Helix 4
4
A
109 118Right-handed alpha
Helix 5
5
A
119 123Right-handed 310
Helix 6
6
A
148 154Right-handed alpha
Helix 7
7
A
158 164Right-handed alpha
Helix 8
8
B
125 142Right-handed alpha
Helix 9
9
B
211 224Right-handed alpha
Helix 10
10
B
241 248Right-handed 310
Helix 11
11
B
251 263Right-handed alpha
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There are 5 sheets in PDB entry 3V96. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 3first strand
Strand 2
B
179 183anti-parallel
Strand 3
B
194 197anti-parallel
Strand 4
B
158 163parallel
Strand 5
B
112 117parallel
Strand 6
B
147 150parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
102 104first strand
Strand 2
A
82 90anti-parallel
Strand 3
A
93 95anti-parallel
Strand 4
A
60 64parallel
Strand 5
A
35 47anti-parallel
Strand 6
A
17 23anti-parallel
Strand 7
A
82 90anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
128 131first strand
Strand 2
A
144 147parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
165 170first strand
Strand 2
A
173 177anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
202 203first strand
Strand 2
B
209 210parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il