Analysis of interatomic Contacts of Structural Units in PDB entry:
3V9G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V9G entry

There are 3 chains in PDB entry 3V9G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 23GLN 563
B
ARG 23GLN 563
C
ARG 23PHE 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 3V9G. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
44 56Right-handed alpha
Helix 2
2
A
98 119Right-handed alpha
Helix 3
3
A
120 137Right-handed alpha
Helix 4
4
A
139 152Right-handed alpha
Helix 5
5
A
154 162Right-handed alpha
Helix 6
6
A
163 181Right-handed alpha
Helix 7
7
A
212 226Right-handed alpha
Helix 8
8
A
235 237Right-handed 310
Helix 9
9
A
238 252Right-handed alpha
Helix 10
10
A
265 274Right-handed alpha
Helix 11
11
A
287 301Right-handed alpha
Helix 12
12
A
302 305Right-handed 310
Helix 13
13
A
328 342Right-handed alpha
Helix 14
14
A
343 346Right-handed 310
Helix 15
15
A
360 373Right-handed alpha
Helix 16
16
A
393 410Right-handed alpha
Helix 17
17
A
441 446Right-handed alpha
Helix 18
18
A
459 461Right-handed 310
Helix 19
19
A
462 474Right-handed alpha
Helix 20
20
A
486 497Right-handed alpha
Helix 21
21
A
536 540Right-handed 310
Helix 22
22
A
559 563Right-handed 310
Helix 23
23
B
44 56Right-handed alpha
Helix 24
24
B
98 119Right-handed alpha
Helix 25
25
B
120 137Right-handed alpha
Helix 26
26
B
139 152Right-handed alpha
Helix 27
27
B
154 163Right-handed alpha
Helix 28
28
B
163 181Right-handed alpha
Helix 29
29
B
212 226Right-handed alpha
Helix 30
30
B
235 237Right-handed 310
Helix 31
31
B
238 252Right-handed alpha
Helix 32
32
B
265 274Right-handed alpha
Helix 33
33
B
287 301Right-handed alpha
Helix 34
34
B
302 305Right-handed 310
Helix 35
35
B
328 342Right-handed alpha
Helix 36
36
B
343 346Right-handed 310
Helix 37
37
B
360 373Right-handed alpha
Helix 38
38
B
393 410Right-handed alpha
Helix 39
39
B
441 446Right-handed alpha
Helix 40
40
B
459 461Right-handed 310
Helix 41
41
B
462 474Right-handed alpha
Helix 42
42
B
486 497Right-handed alpha
Helix 43
43
B
536 540Right-handed 310
Helix 44
44
B
559 563Right-handed 310
Helix 45
45
C
44 56Right-handed alpha
Helix 46
46
C
98 119Right-handed alpha
Helix 47
47
C
120 137Right-handed alpha
Helix 48
48
C
139 152Right-handed alpha
Helix 49
49
C
154 163Right-handed alpha
Helix 50
50
C
163 181Right-handed alpha
Helix 51
51
C
212 226Right-handed alpha
Helix 52
52
C
235 237Right-handed 310
Helix 53
53
C
238 252Right-handed alpha
Helix 54
54
C
265 274Right-handed alpha
Helix 55
55
C
287 301Right-handed alpha
Helix 56
56
C
302 305Right-handed 310
Helix 57
57
C
328 342Right-handed alpha
Helix 58
58
C
343 346Right-handed 310
Helix 59
59
C
360 373Right-handed alpha
Helix 60
60
C
393 410Right-handed alpha
Helix 61
61
C
441 446Right-handed alpha
Helix 62
62
C
459 461Right-handed 310
Helix 63
63
C
462 474Right-handed alpha
Helix 64
64
C
486 497Right-handed alpha
Helix 65
65
C
536 540Right-handed 310
Helix 66
66
D
44 56Right-handed alpha
Helix 67
67
D
98 119Right-handed alpha
Helix 68
68
D
120 137Right-handed alpha
Helix 69
69
D
139 152Right-handed alpha
Helix 70
70
D
154 162Right-handed alpha
Helix 71
71
D
163 181Right-handed alpha
Helix 72
72
D
212 226Right-handed alpha
Helix 73
73
D
235 237Right-handed 310
Helix 74
74
D
238 252Right-handed alpha
Helix 75
75
D
265 274Right-handed alpha
Helix 76
76
D
287 301Right-handed alpha
Helix 77
77
D
302 305Right-handed 310
Helix 78
78
D
328 342Right-handed alpha
Helix 79
79
D
343 346Right-handed 310
Helix 80
80
D
360 373Right-handed alpha
Helix 81
81
D
393 410Right-handed alpha
Helix 82
82
D
441 446Right-handed alpha
Helix 83
83
D
459 461Right-handed 310
Helix 84
84
D
462 474Right-handed alpha
Helix 85
85
D
486 497Right-handed alpha
Helix 86
86
D
523 527Right-handed 310
Helix 87
87
D
536 540Right-handed 310
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There are 25 sheets in PDB entry 3V9G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
24 30first strand
Strand 2
C
24 30anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
62 64first strand
Strand 2
A
86 95parallel
Strand 3
A
78 83anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
66 68first strand
Strand 2
A
71 73anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
191 199first strand
Strand 2
A
542 550anti-parallel
Strand 3
B
503 506parallel
Strand 4
B
479 483parallel
Strand 5
B
319 323parallel
Strand 6
B
351 357parallel
Strand 7
B
452 458parallel
Strand 8
B
432 436parallel
Strand 9
B
413 417anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
259 261first strand
Strand 2
A
229 233parallel
Strand 3
A
203 207parallel
Strand 4
A
279 285parallel
Strand 5
A
310 314parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
413 417first strand
Strand 2
A
432 436anti-parallel
Strand 3
A
452 458parallel
Strand 4
A
351 357parallel
Strand 5
A
319 323parallel
Strand 6
A
479 483parallel
Strand 7
A
503 506parallel
Strand 8
B
542 550parallel
Strand 9
B
191 199anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
421 422first strand
Strand 2
A
428 429anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
476 477first strand
Strand 2
A
523 524anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
24 32first strand
Strand 2
D
24 32anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
62 64first strand
Strand 2
B
90 95parallel
Strand 3
B
78 82anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
66 68first strand
Strand 2
B
71 73anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
259 261first strand
Strand 2
B
229 233parallel
Strand 3
B
203 207parallel
Strand 4
B
279 285parallel
Strand 5
B
310 314parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
421 422first strand
Strand 2
B
428 429anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
476 477first strand
Strand 2
B
523 524anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
62 63first strand
Strand 2
C
86 95parallel
Strand 3
C
78 83anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
66 68first strand
Strand 2
C
71 73anti-parallel
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There are 9 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
191 199first strand
Strand 2
C
542 550anti-parallel
Strand 3
D
503 506parallel
Strand 4
D
479 483parallel
Strand 5
D
319 323parallel
Strand 6
D
351 357parallel
Strand 7
D
452 458parallel
Strand 8
D
432 436parallel
Strand 9
D
413 417anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
259 261first strand
Strand 2
C
229 233parallel
Strand 3
C
203 207parallel
Strand 4
C
279 285parallel
Strand 5
C
310 314parallel
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There are 9 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
413 417first strand
Strand 2
C
432 436anti-parallel
Strand 3
C
452 458parallel
Strand 4
C
351 357parallel
Strand 5
C
319 323parallel
Strand 6
C
479 483parallel
Strand 7
C
503 506parallel
Strand 8
D
542 550parallel
Strand 9
D
191 199anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
421 422first strand
Strand 2
C
428 429anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
476 477first strand
Strand 2
C
523 524anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
62 63first strand
Strand 2
D
86 95parallel
Strand 3
D
78 83anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
66 68first strand
Strand 2
D
71 73anti-parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
259 261first strand
Strand 2
D
229 233parallel
Strand 3
D
203 207parallel
Strand 4
D
279 285parallel
Strand 5
D
310 314parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
421 422first strand
Strand 2
D
428 429anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il