Analysis of interatomic Contacts of Structural Units in PDB entry:
3VI3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VI3 entry

There are 8 chains in PDB entry 3VI3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	LEU 601
B	ARG 6	GLU 445
C	PHE 1	ILE 600
D	ASN 5	GLU 445
L	ASP 1	CYS 219
H	GLN 1	ARG 218
E	ASP 1	CYS 219
F	GLN 1	ARG 218

There are 57 helices in PDB entry 3VI3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	184	189	Right-handed alpha
Helix 2	2	A	196	204	Right-handed alpha
Helix 3	3	A	223	227	Right-handed 310
Helix 4	4	A	350	353	Right-handed 310
Helix 5	5	A	438	440	Right-handed 310
Helix 6	6	B	46	51	Right-handed alpha
Helix 7	7	B	132	134	Right-handed 310
Helix 8	8	B	135	143	Right-handed alpha
Helix 9	9	B	144	154	Right-handed alpha
Helix 10	10	B	208	217	Right-handed alpha
Helix 11	11	B	230	241	Right-handed alpha
Helix 12	12	B	241	246	Right-handed alpha
Helix 13	13	B	268	272	Right-handed 310
Helix 14	14	B	298	309	Right-handed alpha
Helix 15	15	B	321	332	Right-handed alpha
Helix 16	16	B	346	360	Right-handed alpha
Helix 17	17	B	382	384	Right-handed 310
Helix 18	18	B	390	392	Right-handed 310
Helix 19	19	C	80	84	Right-handed 310
Helix 20	20	C	184	189	Right-handed alpha
Helix 21	21	C	196	204	Right-handed alpha
Helix 22	22	C	223	227	Right-handed 310
Helix 23	23	C	438	440	Right-handed 310
Helix 24	24	D	15	20	Right-handed alpha
Helix 25	25	D	47	52	Right-handed alpha
Helix 26	26	D	132	134	Right-handed 310
Helix 27	27	D	135	145	Right-handed alpha
Helix 28	28	D	147	155	Right-handed alpha
Helix 29	29	D	179	185	Right-handed alpha
Helix 30	30	D	208	217	Right-handed alpha
Helix 31	31	D	230	241	Right-handed alpha
Helix 32	32	D	241	246	Right-handed alpha
Helix 33	33	D	266	272	Right-handed 310
Helix 34	34	D	298	309	Right-handed alpha
Helix 35	35	D	321	332	Right-handed alpha
Helix 36	36	D	346	360	Right-handed alpha
Helix 37	37	D	388	392	Right-handed 310
Helix 38	38	L	84	88	Right-handed 310
Helix 39	39	L	126	133	Right-handed alpha
Helix 40	40	L	188	192	Right-handed alpha
Helix 41	41	H	28	32	Right-handed 310
Helix 42	42	H	62	65	Right-handed 310
Helix 43	43	H	74	76	Right-handed 310
Helix 44	44	H	87	91	Right-handed 310
Helix 45	45	H	161	163	Right-handed 310
Helix 46	46	H	189	193	Right-handed 310
Helix 47	47	H	205	208	Right-handed 310
Helix 48	48	E	84	88	Right-handed 310
Helix 49	49	E	126	132	Right-handed alpha
Helix 50	50	E	188	192	Right-handed alpha
Helix 51	51	F	28	32	Right-handed 310
Helix 52	52	F	62	65	Right-handed 310
Helix 53	53	F	74	76	Right-handed 310
Helix 54	54	F	87	91	Right-handed 310
Helix 55	55	F	161	163	Right-handed 310
Helix 56	56	F	191	193	Right-handed 310
Helix 57	57	F	205	208	Right-handed 310

There are 57 sheets in PDB entry 3VI3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD, BE,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	442	446	anti-parallel
Strand 3	A	433	437	anti-parallel
Strand 4	A	419	421	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	34	39	anti-parallel
Strand 3	A	54	59	anti-parallel
Strand 4	A	68	70	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	120	121	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	108	first strand
Strand 2	A	111	116	anti-parallel
Strand 3	A	134	139	anti-parallel
Strand 4	A	144	148	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	178	182	anti-parallel
Strand 3	A	191	195	anti-parallel
Strand 4	A	217	218	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	238	first strand
Strand 2	A	247	256	anti-parallel
Strand 3	A	259	265	anti-parallel
Strand 4	A	272	277	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	292	first strand
Strand 2	A	301	306	anti-parallel
Strand 3	A	323	327	anti-parallel
Strand 4	A	340	343	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	312	first strand
Strand 2	A	318	320	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	359	first strand
Strand 2	A	368	373	anti-parallel
Strand 3	A	383	387	anti-parallel
Strand 4	A	400	402	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	A	393	394	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	521	first strand
Strand 2	A	542	550	anti-parallel
Strand 3	A	481	491	anti-parallel
Strand 4	A	451	460	anti-parallel
Strand 5	A	585	586	parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	465	first strand
Strand 2	A	593	600	parallel
Strand 3	A	563	571	anti-parallel
Strand 4	A	498	507	anti-parallel
Strand 5	A	528	536	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	473	first strand
Strand 2	A	478	479	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	98	103	anti-parallel
Strand 3	B	434	440	parallel
Strand 4	B	420	427	anti-parallel
Strand 5	B	362	366	anti-parallel
Strand 6	B	394	395	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	95	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	403	412	anti-parallel
Strand 4	B	373	380	anti-parallel
Strand 5	B	386	388	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	206	first strand
Strand 2	B	160	167	anti-parallel
Strand 3	B	123	130	parallel
Strand 4	B	251	258	parallel
Strand 5	B	311	318	parallel
Strand 6	B	335	340	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	287	288	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	442	446	anti-parallel
Strand 3	C	432	437	anti-parallel
Strand 4	C	419	423	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	26	first strand
Strand 2	C	34	39	anti-parallel
Strand 3	C	54	59	anti-parallel
Strand 4	C	68	69	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	C	120	121	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	108	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	134	138	anti-parallel
Strand 4	C	145	148	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	172	first strand
Strand 2	C	178	182	anti-parallel
Strand 3	C	191	195	anti-parallel
Strand 4	C	217	218	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	238	first strand
Strand 2	C	247	252	anti-parallel
Strand 3	C	261	265	anti-parallel
Strand 4	C	272	277	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	292	first strand
Strand 2	C	301	306	anti-parallel
Strand 3	C	323	327	anti-parallel
Strand 4	C	340	343	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	312	first strand
Strand 2	C	318	320	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	330	first strand
Strand 2	C	333	334	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	359	first strand
Strand 2	C	368	373	anti-parallel
Strand 3	C	383	387	anti-parallel
Strand 4	C	400	402	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	452	first strand
Strand 2	C	585	586	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	456	first strand
Strand 2	C	481	489	anti-parallel
Strand 3	C	459	460	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	456	first strand
Strand 2	C	481	489	anti-parallel
Strand 3	C	542	550	anti-parallel
Strand 4	C	519	521	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	535	first strand
Strand 2	C	499	506	anti-parallel
Strand 3	C	566	571	anti-parallel
Strand 4	C	593	594	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	D	60	61	anti-parallel

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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	98	104	anti-parallel
Strand 3	D	434	441	parallel
Strand 4	D	421	427	anti-parallel
Strand 5	D	362	366	anti-parallel
Strand 6	D	394	395	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	95	first strand
Strand 2	D	109	116	anti-parallel
Strand 3	D	403	411	anti-parallel
Strand 4	D	374	380	anti-parallel
Strand 5	D	386	387	anti-parallel

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There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	206	first strand
Strand 2	D	160	167	anti-parallel
Strand 3	D	123	130	parallel
Strand 4	D	251	258	parallel
Strand 5	D	311	318	parallel
Strand 6	D	335	340	parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	22	25	anti-parallel
Strand 3	L	75	80	anti-parallel
Strand 4	L	67	71	anti-parallel

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There are 6 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	107	111	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	38	43	anti-parallel
Strand 5	L	50	54	anti-parallel
Strand 6	L	58	59	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	107	111	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	102	103	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	134	144	anti-parallel
Strand 3	L	178	187	anti-parallel
Strand 4	L	164	168	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	159	first strand
Strand 2	L	150	155	anti-parallel
Strand 3	L	196	202	anti-parallel
Strand 4	L	210	215	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	103	108	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	143	150	anti-parallel
Strand 3	H	180	186	anti-parallel
Strand 4	H	168	170	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	143	150	anti-parallel
Strand 3	H	180	186	anti-parallel
Strand 4	H	174	175	anti-parallel

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There are 3 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	199	204	anti-parallel
Strand 3	H	209	214	anti-parallel

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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	75	80	anti-parallel
Strand 4	E	67	71	anti-parallel

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There are 6 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	107	111	parallel
Strand 3	E	89	95	anti-parallel
Strand 4	E	38	43	anti-parallel
Strand 5	E	50	54	anti-parallel
Strand 6	E	58	59	anti-parallel

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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	107	111	parallel
Strand 3	E	89	95	anti-parallel
Strand 4	E	102	103	anti-parallel

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There are 4 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	123	first strand
Strand 2	E	134	144	anti-parallel
Strand 3	E	178	187	anti-parallel
Strand 4	E	164	168	anti-parallel

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There are 4 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	160	first strand
Strand 2	E	149	155	anti-parallel
Strand 3	E	196	203	anti-parallel
Strand 4	E	210	215	anti-parallel

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There are 4 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	112	116	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	52	anti-parallel
Strand 6	F	57	60	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	112	116	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	103	108	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	140	150	anti-parallel
Strand 3	F	180	189	anti-parallel
Strand 4	F	168	170	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	140	150	anti-parallel
Strand 3	F	180	189	anti-parallel
Strand 4	F	174	175	anti-parallel

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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	159	first strand
Strand 2	F	199	204	anti-parallel
Strand 3	F	209	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VI3

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VI3