Analysis of interatomic Contacts of Structural Units in PDB entry:
3VL6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VL6 entry

There is 1 chain in PDB entry 3VL6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1VAL 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3VL6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 33Right-handed alpha
Helix 2
2
A
44 52Right-handed alpha
Helix 3
3
A
56 65Right-handed alpha
Helix 4
4
A
76 80Right-handed 310
Helix 5
5
A
87 101Right-handed alpha
Helix 6
6
A
115 119Right-handed 310
Helix 7
7
A
122 129Right-handed alpha
Helix 8
8
A
140 144Right-handed 310
Helix 9
9
A
153 157Right-handed 310
Helix 10
10
A
166 183Right-handed alpha
Helix 11
11
A
197 211Right-handed alpha
Helix 12
12
A
212 214Right-handed 310
Helix 13
13
A
224 234Right-handed alpha
Helix 14
14
A
235 238Right-handed 310
Helix 15
15
A
244 260Right-handed alpha
Helix 16
16
A
261 264Right-handed 310
Helix 17
17
A
285 289Right-handed 310
Helix 18
18
A
296 310Right-handed alpha
Helix 19
19
A
313 330Right-handed alpha
Helix 20
20
A
334 338Right-handed 310
Helix 21
21
A
342 346Right-handed 310
Helix 22
22
A
348 362Right-handed alpha
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There are 2 sheets in PDB entry 3VL6. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
3 10parallel
Strand 3
A
68 73parallel
Strand 4
A
276 280parallel
Strand 5
A
266 270anti-parallel
Strand 6
A
104 110anti-parallel
Strand 7
A
131 137anti-parallel
Strand 8
A
240 243parallel
Strand 9
A
187 192parallel
Strand 10
A
218 223parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
158 160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il