Analysis of interatomic Contacts of Structural Units in PDB entry:
3VLX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VLX entry

There is 1 chain in PDB entry 3VLX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 18ARG 555
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3VLX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 24Right-handed 310
Helix 2
2
A
38 41Right-handed 310
Helix 3
3
A
45 54Right-handed alpha
Helix 4
4
A
57 62Right-handed alpha
Helix 5
5
A
64 69Right-handed alpha
Helix 6
6
A
72 77Right-handed alpha
Helix 7
7
A
79 88Right-handed alpha
Helix 8
8
A
89 93Right-handed 310
Helix 9
9
A
112 114Right-handed 310
Helix 10
10
A
119 132Right-handed alpha
Helix 11
11
A
133 136Right-handed 310
Helix 12
12
A
155 166Right-handed alpha
Helix 13
13
A
197 210Right-handed alpha
Helix 14
14
A
215 219Right-handed 310
Helix 15
15
A
238 242Right-handed 310
Helix 16
16
A
284 300Right-handed alpha
Helix 17
17
A
304 308Right-handed 310
Helix 18
18
A
309 318Right-handed alpha
Helix 19
19
A
318 329Right-handed alpha
Helix 20
20
A
330 334Right-handed 310
Helix 21
21
A
371 373Right-handed 310
Helix 22
22
A
377 392Right-handed alpha
Helix 23
23
A
413 418Right-handed alpha
Helix 24
24
A
419 425Right-handed 310
Helix 25
25
A
431 436Right-handed alpha
Helix 26
26
A
441 445Right-handed 310
Helix 27
27
A
453 467Right-handed alpha
Helix 28
28
A
487 491Right-handed 310
Helix 29
29
A
537 551Right-handed alpha
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There are 6 sheets in PDB entry 3VLX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
33 36anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
105 109anti-parallel
Strand 3
A
146 152anti-parallel
Strand 4
A
137 140anti-parallel
Strand 5
A
375 376anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
395 398anti-parallel
Strand 3
A
404 410anti-parallel
Strand 4
A
364 369anti-parallel
Strand 5
A
355 358anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
244 251parallel
Strand 3
A
254 261anti-parallel
Strand 4
A
274 281anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 439first strand
Strand 2
A
476 479parallel
Strand 3
A
493 501parallel
Strand 4
A
507 515anti-parallel
Strand 5
A
527 534anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 469first strand
Strand 2
A
553 554anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il