Analysis of interatomic Contacts of Structural Units in PDB entry:
3VNH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VNH entry

There is 1 chain in PDB entry 3VNH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 1THR 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 3VNH


There are 8 sheets in PDB entry 3VNH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
31 33first strand
Strand 2
A
21 24anti-parallel
Strand 3
A
7 10anti-parallel
Strand 4
A
284 287anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
45 49first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
72 76anti-parallel
Strand 4
A
81 84anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
59 62first strand
Strand 2
A
65 68anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
96 100first strand
Strand 2
A
103 107anti-parallel
Strand 3
A
119 122anti-parallel
Strand 4
A
129 132anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
110 111first strand
Strand 2
A
114 115anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
143 147first strand
Strand 2
A
150 157anti-parallel
Strand 3
A
162 170anti-parallel
Strand 4
A
175 178anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
190 194first strand
Strand 2
A
197 204anti-parallel
Strand 3
A
209 217anti-parallel
Strand 4
A
222 226anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
237 241first strand
Strand 2
A
244 248anti-parallel
Strand 3
A
259 264anti-parallel
Strand 4
A
269 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il