Analysis of interatomic Contacts of Structural Units in PDB entry:
3VPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VPN entry

There are 2 chains in PDB entry 3VPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 65MET 350
B
 MET 65MET 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3VPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 100Right-handed alpha
Helix 2
2
A
103 107Right-handed 310
Helix 3
3
A
112 119Right-handed alpha
Helix 4
4
A
120 148Right-handed alpha
Helix 5
5
A
148 153Right-handed alpha
Helix 6
6
A
155 184Right-handed alpha
Helix 7
7
A
186 195Right-handed alpha
Helix 8
8
A
195 200Right-handed alpha
Helix 9
9
A
200 216Right-handed alpha
Helix 10
10
A
220 234Right-handed alpha
Helix 11
11
A
236 249Right-handed alpha
Helix 12
12
A
252 279Right-handed alpha
Helix 13
13
A
285 306Right-handed alpha
Helix 14
14
A
309 314Right-handed 310
Helix 15
15
A
316 335Right-handed alpha
Helix 16
16
B
87 100Right-handed alpha
Helix 17
17
B
103 107Right-handed 310
Helix 18
18
B
111 118Right-handed alpha
Helix 19
19
B
120 148Right-handed alpha
Helix 20
20
B
148 153Right-handed alpha
Helix 21
21
B
155 184Right-handed alpha
Helix 22
22
B
186 195Right-handed alpha
Helix 23
23
B
195 200Right-handed alpha
Helix 24
24
B
200 216Right-handed alpha
Helix 25
25
B
220 234Right-handed alpha
Helix 26
26
B
236 249Right-handed alpha
Helix 27
27
B
252 279Right-handed alpha
Helix 28
28
B
285 306Right-handed alpha
Helix 29
29
B
309 314Right-handed 310
Helix 30
30
B
316 335Right-handed alpha
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There are no sheets in PDB entry 3VPN
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il