Analysis of interatomic Contacts of Structural Units in PDB entry:
3VSX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VSX entry

There are 2 chains in PDB entry 3VSX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1ARG 340
B
 LEU 1ARG 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 3VSX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 60Right-handed alpha
Helix 2
2
A
65 69Right-handed 310
Helix 3
3
A
115 120Right-handed alpha
Helix 4
4
A
132 136Right-handed 310
Helix 5
5
A
142 149Right-handed alpha
Helix 6
6
A
182 184Right-handed 310
Helix 7
7
A
235 247Right-handed alpha
Helix 8
8
A
280 285Right-handed alpha
Helix 9
9
A
316 321Right-handed alpha
Helix 10
10
B
55 60Right-handed alpha
Helix 11
11
B
65 69Right-handed 310
Helix 12
12
B
115 120Right-handed alpha
Helix 13
13
B
132 136Right-handed 310
Helix 14
14
B
142 149Right-handed alpha
Helix 15
15
B
235 247Right-handed alpha
Helix 16
16
B
260 265Right-handed 310
Helix 17
17
B
280 284Right-handed alpha
Helix 18
18
B
316 321Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 3VSX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 82first strand
Strand 2
A
87 99anti-parallel
Strand 3
A
19 26anti-parallel
Strand 4
A
8 15anti-parallel
Strand 5
A
174 178anti-parallel
Strand 6
A
157 162anti-parallel
Strand 7
A
323 328anti-parallel
Strand 8
A
333 339anti-parallel
Strand 9
A
186 194anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 82first strand
Strand 2
A
87 99anti-parallel
Strand 3
A
102 113anti-parallel
Strand 4
A
44 47parallel
Strand 5
A
126 129anti-parallel
Strand 6
A
31 38parallel
Strand 7
A
19 26anti-parallel
Strand 8
A
8 15anti-parallel
Strand 9
A
174 178anti-parallel
Strand 10
A
157 162anti-parallel
Strand 11
A
323 328anti-parallel
Strand 12
A
333 339anti-parallel
Strand 13
A
186 194anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 279first strand
Strand 2
A
268 272anti-parallel
Strand 3
A
202 209anti-parallel
Strand 4
A
221 225anti-parallel
Strand 5
A
313 315parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
300 302parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
255 258anti-parallel
Strand 3
A
295 297anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 83first strand
Strand 2
B
86 99anti-parallel
Strand 3
B
19 26anti-parallel
Strand 4
B
8 15anti-parallel
Strand 5
B
174 178anti-parallel
Strand 6
B
157 162anti-parallel
Strand 7
B
323 328anti-parallel
Strand 8
B
333 338anti-parallel
Strand 9
B
191 194anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 83first strand
Strand 2
B
86 99anti-parallel
Strand 3
B
102 113anti-parallel
Strand 4
B
44 47parallel
Strand 5
B
126 129anti-parallel
Strand 6
B
31 38parallel
Strand 7
B
19 26anti-parallel
Strand 8
B
8 15anti-parallel
Strand 9
B
174 178anti-parallel
Strand 10
B
157 162anti-parallel
Strand 11
B
323 328anti-parallel
Strand 12
B
333 338anti-parallel
Strand 13
B
191 194anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 279first strand
Strand 2
B
268 272anti-parallel
Strand 3
B
202 210anti-parallel
Strand 4
B
221 224anti-parallel
Strand 5
B
313 315parallel
Strand 6
B
232 234anti-parallel
Strand 7
B
300 302parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 250first strand
Strand 2
B
255 258anti-parallel
Strand 3
B
295 298anti-parallel
Strand 4
B
285 286anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il