Analysis of interatomic Contacts of Structural Units in PDB entry:
3VZB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VZB entry

There are 3 chains in PDB entry 3VZB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5GLY 364
B
 SER 8SER 363
C
 MET 6SER 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3VZB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 29Right-handed alpha
Helix 2
2
A
29 38Right-handed alpha
Helix 3
3
A
38 45Right-handed alpha
Helix 4
4
A
58 67Right-handed alpha
Helix 5
5
A
68 72Right-handed 310
Helix 6
6
A
80 94Right-handed alpha
Helix 7
7
A
96 101Right-handed alpha
Helix 8
8
A
114 124Right-handed alpha
Helix 9
9
A
130 145Right-handed alpha
Helix 10
10
A
173 183Right-handed alpha
Helix 11
11
A
184 189Right-handed 310
Helix 12
12
A
190 202Right-handed alpha
Helix 13
13
A
216 218Right-handed 310
Helix 14
14
A
295 307Right-handed alpha
Helix 15
15
A
308 309Right-handed 310
Helix 16
16
A
310 315Right-handed 310
Helix 17
17
B
24 29Right-handed alpha
Helix 18
18
B
29 38Right-handed alpha
Helix 19
19
B
38 45Right-handed alpha
Helix 20
20
B
58 67Right-handed alpha
Helix 21
21
B
68 72Right-handed 310
Helix 22
22
B
80 93Right-handed alpha
Helix 23
23
B
96 101Right-handed alpha
Helix 24
24
B
114 122Right-handed alpha
Helix 25
25
B
130 145Right-handed alpha
Helix 26
26
B
173 182Right-handed alpha
Helix 27
27
B
183 185Right-handed 310
Helix 28
28
B
190 202Right-handed alpha
Helix 29
29
B
216 218Right-handed 310
Helix 30
30
B
295 306Right-handed alpha
Helix 31
31
B
310 314Right-handed 310
Helix 32
32
C
24 29Right-handed alpha
Helix 33
33
C
29 38Right-handed alpha
Helix 34
34
C
38 45Right-handed alpha
Helix 35
35
C
58 67Right-handed alpha
Helix 36
36
C
68 72Right-handed 310
Helix 37
37
C
80 93Right-handed alpha
Helix 38
38
C
96 101Right-handed alpha
Helix 39
39
C
114 124Right-handed alpha
Helix 40
40
C
130 145Right-handed alpha
Helix 41
41
C
173 182Right-handed alpha
Helix 42
42
C
183 188Right-handed 310
Helix 43
43
C
189 202Right-handed alpha
Helix 44
44
C
295 306Right-handed alpha
Helix 45
45
C
307 309Right-handed 310
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There are 11 sheets in PDB entry 3VZB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
146 157anti-parallel
Strand 3
A
350 362anti-parallel
Strand 4
A
319 331anti-parallel
Strand 5
A
206 214anti-parallel
Strand 6
A
250 251anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
206 214anti-parallel
Strand 3
A
256 263anti-parallel
Strand 4
A
168 172anti-parallel
Strand 5
A
336 340anti-parallel
Strand 6
A
343 347anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
146 157anti-parallel
Strand 3
A
350 362anti-parallel
Strand 4
A
319 331anti-parallel
Strand 5
A
285 291anti-parallel
Strand 6
A
256 263anti-parallel
Strand 7
A
168 172anti-parallel
Strand 8
A
336 340anti-parallel
Strand 9
A
343 347anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 53first strand
Strand 2
A
15 21parallel
Strand 3
A
74 79parallel
Strand 4
A
105 109parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 53first strand
Strand 2
B
15 21parallel
Strand 3
B
74 79parallel
Strand 4
B
105 109parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
147 157anti-parallel
Strand 3
B
350 362anti-parallel
Strand 4
B
319 331anti-parallel
Strand 5
B
206 214anti-parallel
Strand 6
B
250 251anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 251first strand
Strand 2
B
206 214anti-parallel
Strand 3
B
256 263anti-parallel
Strand 4
B
168 172anti-parallel
Strand 5
B
337 340anti-parallel
Strand 6
B
343 346anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
147 157anti-parallel
Strand 3
B
350 362anti-parallel
Strand 4
B
319 331anti-parallel
Strand 5
B
285 291anti-parallel
Strand 6
B
256 263anti-parallel
Strand 7
B
168 172anti-parallel
Strand 8
B
337 340anti-parallel
Strand 9
B
343 346anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 53first strand
Strand 2
C
15 21parallel
Strand 3
C
74 79parallel
Strand 4
C
105 109parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 165first strand
Strand 2
C
147 157anti-parallel
Strand 3
C
350 362anti-parallel
Strand 4
C
319 331anti-parallel
Strand 5
C
208 214anti-parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 165first strand
Strand 2
C
147 157anti-parallel
Strand 3
C
350 362anti-parallel
Strand 4
C
319 331anti-parallel
Strand 5
C
285 291anti-parallel
Strand 6
C
257 263anti-parallel
Strand 7
C
168 172anti-parallel
Strand 8
C
337 340anti-parallel
Strand 9
C
343 346anti-parallel
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