Analysis of interatomic Contacts of Structural Units in PDB entry:
3W03


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W03 entry

There are 4 chains in PDB entry 3W03 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLN 230
B
 SER -1GLN 227
C
 MET 1LYS 164
D
 MET 1LYS 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3W03. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 10Right-handed alpha
Helix 2
2
A
50 62Right-handed alpha
Helix 3
3
A
68 86Right-handed alpha
Helix 4
4
A
127 135Right-handed alpha
Helix 5
5
A
135 170Right-handed alpha
Helix 6
6
A
185 197Right-handed alpha
Helix 7
7
A
197 202Right-handed alpha
Helix 8
8
A
207 214Right-handed alpha
Helix 9
9
A
214 229Right-handed alpha
Helix 10
10
B
0 11Right-handed alpha
Helix 11
11
B
50 62Right-handed alpha
Helix 12
12
B
68 86Right-handed alpha
Helix 13
13
B
127 135Right-handed alpha
Helix 14
14
B
135 168Right-handed alpha
Helix 15
15
B
176 180Right-handed 310
Helix 16
16
B
185 197Right-handed alpha
Helix 17
17
B
197 202Right-handed alpha
Helix 18
18
B
207 214Right-handed alpha
Helix 19
19
B
214 226Right-handed alpha
Helix 20
20
C
27 29Right-handed 310
Helix 21
21
C
49 59Right-handed alpha
Helix 22
22
C
62 75Right-handed alpha
Helix 23
23
C
118 164Right-handed alpha
Helix 24
24
D
27 29Right-handed 310
Helix 25
25
D
49 59Right-handed alpha
Helix 26
26
D
62 75Right-handed alpha
Helix 27
27
D
118 157Right-handed alpha
Helix 28
28
D
157 164Right-handed alpha
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There are 6 sheets in PDB entry 3W03. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
22 30anti-parallel
Strand 3
A
33 39anti-parallel
Strand 4
A
44 49anti-parallel
Strand 5
A
115 125anti-parallel
Strand 6
A
103 112anti-parallel
Strand 7
A
94 100anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
22 30anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
44 49anti-parallel
Strand 5
B
115 125anti-parallel
Strand 6
B
103 112anti-parallel
Strand 7
B
94 100anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 8first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
31 37anti-parallel
Strand 4
C
42 48anti-parallel
Strand 5
C
114 115anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 88first strand
Strand 2
C
94 101anti-parallel
Strand 3
C
104 112anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 10first strand
Strand 2
D
13 24anti-parallel
Strand 3
D
31 37anti-parallel
Strand 4
D
42 48anti-parallel
Strand 5
D
114 115anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 88first strand
Strand 2
D
94 101anti-parallel
Strand 3
D
104 112anti-parallel
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