Analysis of interatomic Contacts of Structural Units in PDB entry:
3WJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WJL entry

There are 3 chains in PDB entry 3WJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 232LEU 443
B
 ASP 237SER 444
C
 PRO 3GLN 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3WJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
236 238Right-handed 310
Helix 2
2
A
246 252Right-handed alpha
Helix 3
3
A
309 315Right-handed alpha
Helix 4
4
A
355 360Right-handed 310
Helix 5
5
A
414 419Right-handed alpha
Helix 6
6
A
432 434Right-handed 310
Helix 7
7
B
246 252Right-handed alpha
Helix 8
8
B
267 271Right-handed 310
Helix 9
9
B
309 315Right-handed alpha
Helix 10
10
B
354 360Right-handed 310
Helix 11
11
B
414 419Right-handed alpha
Helix 12
12
B
432 434Right-handed 310
Helix 13
13
C
59 63Right-handed 310
Helix 14
14
C
111 113Right-handed 310
Helix 15
15
C
142 146Right-handed 310
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There are 16 sheets in PDB entry 3WJL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
258 266anti-parallel
Strand 3
A
300 307anti-parallel
Strand 4
A
288 290anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 284first strand
Strand 2
A
274 279anti-parallel
Strand 3
A
319 324anti-parallel
Strand 4
A
332 336anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
362 372anti-parallel
Strand 3
A
404 413anti-parallel
Strand 4
A
391 393anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
362 372anti-parallel
Strand 3
A
404 413anti-parallel
Strand 4
A
397 398anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
423 428anti-parallel
Strand 4
A
436 441anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 243first strand
Strand 2
B
258 266anti-parallel
Strand 3
B
300 307anti-parallel
Strand 4
B
288 289anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 243first strand
Strand 2
B
258 266anti-parallel
Strand 3
B
300 307anti-parallel
Strand 4
B
293 294anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 284first strand
Strand 2
B
274 279anti-parallel
Strand 3
B
319 324anti-parallel
Strand 4
B
332 336anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 351first strand
Strand 2
B
362 372anti-parallel
Strand 3
B
404 413anti-parallel
Strand 4
B
391 393anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 351first strand
Strand 2
B
362 372anti-parallel
Strand 3
B
404 413anti-parallel
Strand 4
B
397 398anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 388first strand
Strand 2
B
378 383anti-parallel
Strand 3
B
423 428anti-parallel
Strand 4
B
436 441anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 8first strand
Strand 2
C
21 27anti-parallel
Strand 3
C
53 57anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 17first strand
Strand 2
C
79 84parallel
Strand 3
C
64 69anti-parallel
Strand 4
C
38 41anti-parallel
Strand 5
C
44 46anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 91first strand
Strand 2
C
103 109anti-parallel
Strand 3
C
135 138anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 98first strand
Strand 2
C
165 170parallel
Strand 3
C
147 155anti-parallel
Strand 4
C
116 122anti-parallel
Strand 5
C
125 130anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 98first strand
Strand 2
C
165 170parallel
Strand 3
C
147 155anti-parallel
Strand 4
C
158 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il