Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZKS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZKS entry

There are 2 chains in PDB entry 3ZKS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 13PRO 397
D
 GLN 160SER 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3ZKS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 19Right-handed 310
Helix 2
2
A
69 73Right-handed 310
Helix 3
3
A
139 143Right-handed 310
Helix 4
4
A
151 161Right-handed alpha
Helix 5
5
A
193 197Right-handed 310
Helix 6
6
A
230 235Right-handed alpha
Helix 7
7
A
251 265Right-handed alpha
Helix 8
8
A
271 276Right-handed alpha
Helix 9
9
A
314 318Right-handed alpha
Helix 10
10
A
346 351Right-handed alpha
Helix 11
11
D
187 191Right-handed 310
Helix 12
12
D
233 235Right-handed 310
Helix 13
13
D
246 250Right-handed 310
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There are 11 sheets in PDB entry 3ZKS. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, A, DB, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
31 36anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 87first strand
Strand 2
A
90 102anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
165 170anti-parallel
Strand 3
A
353 358anti-parallel
Strand 4
A
363 368anti-parallel
Strand 5
A
202 205anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
296 301anti-parallel
Strand 4
A
307 313anti-parallel
Strand 5
A
380 387anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
343 345parallel
Strand 3
A
247 250anti-parallel
Strand 4
A
336 339parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
330 334anti-parallel
Strand 3
A
319 321anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
377 378anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
162 166first strand
Strand 2
D
177 184anti-parallel
Strand 3
D
237 242anti-parallel
Strand 4
D
227 232anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
169 171first strand
Strand 2
D
265 269parallel
Strand 3
D
251 257anti-parallel
Strand 4
D
260 261anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
169 171first strand
Strand 2
D
265 269parallel
Strand 3
D
251 257anti-parallel
Strand 4
D
193 198anti-parallel
Strand 5
D
205 210anti-parallel
Strand 6
D
217 219anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
260 261first strand
Strand 2
D
251 257anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il