Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZP0 entry

There are 2 chains in PDB entry 3ZP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ASP 5PRO 325
F
 GLY 1ASP 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3ZP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
60 67Right-handed alpha
Helix 2
2
E
68 75Right-handed 310
Helix 3
3
E
101 110Right-handed alpha
Helix 4
4
E
122 126Right-handed 310
Helix 5
5
E
187 196Right-handed alpha
Helix 6
6
F
37 59Right-handed alpha
Helix 7
7
F
74 127Right-handed alpha
Helix 8
8
F
145 154Right-handed alpha
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There are 12 sheets in PDB entry 3ZP0. Click on sheet of interest to get list of strands forming it: FA, EA, EB, EC, ED, EE, EF, EG, EH, EI, EJ, EK,

There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
31 36first strand
Strand 2
F
22 28anti-parallel
Strand 3
E
6 11anti-parallel
Strand 4
F
137 140anti-parallel
Strand 5
F
130 132anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
19 20first strand
Strand 2
E
28 29anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 35first strand
Strand 2
E
316 318anti-parallel
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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
37 38first strand
Strand 2
E
295 296parallel
Strand 3
E
308 309parallel
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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 48first strand
Strand 2
E
275 280parallel
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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
54 57first strand
Strand 2
E
83 85parallel
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There are 5 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
97 99first strand
Strand 2
E
229 237parallel
Strand 3
E
176 184anti-parallel
Strand 4
E
251 254anti-parallel
Strand 5
E
151 153anti-parallel
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There are 5 strands in EG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
97 99first strand
Strand 2
E
229 237parallel
Strand 3
E
176 184anti-parallel
Strand 4
E
256 262anti-parallel
Strand 5
E
114 119anti-parallel
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There are 2 strands in EH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
129 130first strand
Strand 2
E
155 156anti-parallel
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There are 2 strands in EI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
136 141first strand
Strand 2
E
144 146anti-parallel
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There are 4 strands in EJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
164 169first strand
Strand 2
E
242 247anti-parallel
Strand 3
E
202 205anti-parallel
Strand 4
E
210 213anti-parallel
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There are 3 strands in EK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
287 288first strand
Strand 2
E
282 284anti-parallel
Strand 3
E
303 304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il