Analysis of interatomic Contacts of Structural Units in PDB entry:
4ADV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ADV entry

There are 22 chains in PDB entry 4ADV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 5	A 1534
B	MET 8	SER 225
C	GLY 1	ILE 206
D	ALA 1	LYS 205
E	GLU 9	LYS 158
F	MET 1	SER 100
G	ARG 2	ALA 151
H	SER 1	ALA 129
I	ASN 3	ARG 129
J	ARG 5	LEU 102
K	ARG 12	VAL 128
L	ALA 1	ALA 123
M	ALA 1	PRO 114
N	ALA 1	TRP 100
O	SER 1	ARG 88
P	MET 1	ALA 82
Q	LYS 3	VAL 82
R	GLU 19	HIS 73
S	ARG 2	ARG 80
T	ASN 2	ALA 86
U	ILE 3	LYS 53
V	GLN 17	ALA 268

There are100 helices in PDB entry 4ADV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	41	44	Right-handed 310
Helix 2	2	B	45	61	Right-handed alpha
Helix 3	3	B	72	77	Right-handed alpha
Helix 4	4	B	79	83	Right-handed 310
Helix 5	5	B	102	122	Right-handed alpha
Helix 6	6	B	123	126	Right-handed 310
Helix 7	7	B	129	147	Right-handed alpha
Helix 8	8	B	168	179	Right-handed alpha
Helix 9	9	B	191	195	Right-handed 310
Helix 10	10	B	205	222	Right-handed alpha
Helix 11	11	C	7	11	Right-handed 310
Helix 12	12	C	24	45	Right-handed alpha
Helix 13	13	C	71	77	Right-handed alpha
Helix 14	14	C	80	90	Right-handed alpha
Helix 15	15	C	111	124	Right-handed alpha
Helix 16	16	C	128	139	Right-handed alpha
Helix 17	17	C	140	142	Right-handed 310
Helix 18	18	C	176	180	Right-handed 310
Helix 19	19	D	7	14	Right-handed alpha
Helix 20	20	D	50	65	Right-handed alpha
Helix 21	21	D	67	81	Right-handed alpha
Helix 22	22	D	84	95	Right-handed alpha
Helix 23	23	D	96	103	Right-handed alpha
Helix 24	24	D	109	119	Right-handed alpha
Helix 25	25	D	152	158	Right-handed alpha
Helix 26	26	D	159	163	Right-handed 310
Helix 27	27	D	186	190	Right-handed 310
Helix 28	28	D	195	203	Right-handed alpha
Helix 29	29	E	54	68	Right-handed alpha
Helix 30	30	E	108	115	Right-handed alpha
Helix 31	31	E	131	146	Right-handed alpha
Helix 32	32	E	151	156	Right-handed alpha
Helix 33	33	F	12	16	Right-handed 310
Helix 34	34	F	17	31	Right-handed alpha
Helix 35	35	F	67	80	Right-handed alpha
Helix 36	36	G	19	30	Right-handed alpha
Helix 37	37	G	34	48	Right-handed alpha
Helix 38	38	G	48	53	Right-handed alpha
Helix 39	39	G	58	67	Right-handed alpha
Helix 40	40	G	91	106	Right-handed alpha
Helix 41	41	G	114	128	Right-handed alpha
Helix 42	42	G	130	142	Right-handed alpha
Helix 43	43	H	4	19	Right-handed alpha
Helix 44	44	H	29	42	Right-handed alpha
Helix 45	45	H	93	98	Right-handed 310
Helix 46	46	H	112	119	Right-handed alpha
Helix 47	47	I	34	39	Right-handed alpha
Helix 48	48	I	48	53	Right-handed alpha
Helix 49	49	I	70	90	Right-handed alpha
Helix 50	50	I	93	101	Right-handed alpha
Helix 51	51	J	14	28	Right-handed alpha
Helix 52	52	K	58	67	Right-handed alpha
Helix 53	53	K	68	72	Right-handed 310
Helix 54	54	K	93	103	Right-handed alpha
Helix 55	55	L	2	9	Right-handed alpha
Helix 56	56	M	13	19	Right-handed alpha
Helix 57	57	M	27	35	Right-handed alpha
Helix 58	58	M	44	47	Right-handed 310
Helix 59	59	M	48	56	Right-handed alpha
Helix 60	60	M	64	81	Right-handed alpha
Helix 61	61	M	84	91	Right-handed alpha
Helix 62	62	M	105	110	Right-handed alpha
Helix 63	63	N	4	19	Right-handed alpha
Helix 64	64	N	19	31	Right-handed alpha
Helix 65	65	N	41	48	Right-handed alpha
Helix 66	66	N	80	89	Right-handed alpha
Helix 67	67	O	3	15	Right-handed alpha
Helix 68	68	O	23	44	Right-handed alpha
Helix 69	69	O	51	71	Right-handed alpha
Helix 70	70	O	73	81	Right-handed alpha
Helix 71	71	P	53	62	Right-handed alpha
Helix 72	72	P	68	78	Right-handed alpha
Helix 73	73	R	24	28	Right-handed 310
Helix 74	74	R	48	64	Right-handed alpha
Helix 75	75	S	11	24	Right-handed alpha
Helix 76	76	S	69	74	Right-handed 310
Helix 77	77	T	5	40	Right-handed alpha
Helix 78	78	T	42	58	Right-handed alpha
Helix 79	79	T	59	63	Right-handed 310
Helix 80	80	T	69	84	Right-handed alpha
Helix 81	81	U	15	19	Right-handed 310
Helix 82	82	U	28	33	Right-handed alpha
Helix 83	83	U	37	44	Right-handed alpha
Helix 84	84	U	46	51	Right-handed alpha
Helix 85	85	V	22	34	Right-handed alpha
Helix 86	86	V	51	57	Right-handed alpha
Helix 87	87	V	68	77	Right-handed alpha
Helix 88	88	V	81	83	Right-handed 310
Helix 89	89	V	91	95	Right-handed 310
Helix 90	90	V	96	105	Right-handed alpha
Helix 91	91	V	118	128	Right-handed alpha
Helix 92	92	V	129	131	Right-handed 310
Helix 93	93	V	142	150	Right-handed alpha
Helix 94	94	V	158	167	Right-handed alpha
Helix 95	95	V	177	179	Right-handed 310
Helix 96	96	V	206	220	Right-handed alpha
Helix 97	97	V	224	229	Right-handed alpha
Helix 98	98	V	234	241	Right-handed alpha
Helix 99	99	V	249	252	Right-handed 310
Helix 100	100	V	253	268	Right-handed alpha

There are 26 sheets in PDB entry 4ADV. Click on sheet of interest to get list of strands forming it: BA, CA, CB, A, EA, EB, EC, ED, FA, FB, HA, HB, HC, HD, HE, IA, JA, JB, NA, KA, LA, LB, PA, QA, VA, VB,

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	67	69	parallel
Strand 3	B	160	162	parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	55	first strand
Strand 2	C	66	69	anti-parallel
Strand 3	C	101	104	parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	148	149	anti-parallel
Strand 3	C	197	201	anti-parallel
Strand 4	C	182	186	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	122	124	anti-parallel
Strand 3	D	141	144	anti-parallel
Strand 4	D	178	180	anti-parallel
Strand 5	D	172	173	anti-parallel

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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	16	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	E	44	49	anti-parallel
Strand 4	E	71	72	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	23	first strand
Strand 2	E	28	30	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	91	94	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	105	first strand
Strand 2	E	122	123	parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	89	91	anti-parallel

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There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	46	first strand
Strand 2	F	56	60	anti-parallel
Strand 3	F	8	10	anti-parallel
Strand 4	F	84	86	anti-parallel

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There are 3 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	27	first strand
Strand 2	H	57	61	anti-parallel
Strand 3	H	48	51	anti-parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	73	76	first strand
Strand 2	H	122	129	anti-parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	86	first strand
Strand 2	H	122	129	parallel

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There are 4 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	111	first strand
Strand 2	H	100	105	anti-parallel
Strand 3	H	122	129	anti-parallel
Strand 4	H	85	86	parallel

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There are 4 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	111	first strand
Strand 2	H	100	105	anti-parallel
Strand 3	H	122	129	anti-parallel
Strand 4	H	73	76	anti-parallel

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There are 4 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	7	first strand
Strand 2	I	18	21	anti-parallel
Strand 3	I	61	64	anti-parallel
Strand 4	I	27	29	parallel

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There are 2 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	63	72	anti-parallel

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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	51	first strand
Strand 2	J	63	72	anti-parallel

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There are 2 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	96	97	first strand
Strand 2	J	63	72	parallel

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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	32	first strand
Strand 2	K	20	24	anti-parallel
Strand 3	K	83	86	parallel
Strand 4	K	109	111	parallel

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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	30	first strand
Strand 2	L	80	81	anti-parallel

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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	51	55	first strand
Strand 2	L	61	65	anti-parallel

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There are 3 strands in PA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	2	3	first strand
Strand 2	P	20	23	anti-parallel
Strand 3	P	34	35	anti-parallel

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There are 2 strands in QA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	19	22	first strand
Strand 2	Q	43	46	anti-parallel

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There are 2 strands in VA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	19	20	first strand
Strand 2	V	181	182	anti-parallel

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There are 7 strands in VB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	85	88	first strand
Strand 2	V	62	65	parallel
Strand 3	V	41	44	parallel
Strand 4	V	108	113	parallel
Strand 5	V	133	141	parallel
Strand 6	V	189	196	anti-parallel
Strand 7	V	168	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ADV

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ADV