Analysis of interatomic Contacts of Structural Units in PDB entry:
4B84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4B84 entry

There are 2 chains in PDB entry 4B84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 1SER 541
B
GLU 4SER 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 4B84. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
42 46Right-handed 310
Helix 2
2
A
80 85Right-handed alpha
Helix 3
3
A
130 134Right-handed 310
Helix 4
4
A
135 143Right-handed alpha
Helix 5
5
A
153 159Right-handed alpha
Helix 6
6
A
170 187Right-handed alpha
Helix 7
7
A
188 190Right-handed 310
Helix 8
8
A
203 215Right-handed alpha
Helix 9
9
A
216 219Right-handed 310
Helix 10
10
A
240 255Right-handed alpha
Helix 11
11
A
264 274Right-handed alpha
Helix 12
12
A
277 285Right-handed alpha
Helix 13
13
A
286 289Right-handed 310
Helix 14
14
A
311 319Right-handed alpha
Helix 15
15
A
335 340Right-handed alpha
Helix 16
16
A
355 367Right-handed alpha
Helix 17
17
A
371 383Right-handed alpha
Helix 18
18
A
390 407Right-handed alpha
Helix 19
19
A
407 421Right-handed alpha
Helix 20
20
A
440 444Right-handed 310
Helix 21
21
A
450 455Right-handed alpha
Helix 22
22
A
456 460Right-handed 310
Helix 23
23
A
460 464Right-handed 310
Helix 24
24
A
466 487Right-handed alpha
Helix 25
25
A
525 535Right-handed alpha
Helix 26
26
B
5 7Right-handed 310
Helix 27
27
B
42 46Right-handed 310
Helix 28
28
B
80 85Right-handed alpha
Helix 29
29
B
130 134Right-handed 310
Helix 30
30
B
135 142Right-handed alpha
Helix 31
31
B
153 159Right-handed alpha
Helix 32
32
B
170 187Right-handed alpha
Helix 33
33
B
188 190Right-handed 310
Helix 34
34
B
203 214Right-handed alpha
Helix 35
35
B
215 219Right-handed 310
Helix 36
36
B
241 256Right-handed alpha
Helix 37
37
B
265 275Right-handed alpha
Helix 38
38
B
277 286Right-handed alpha
Helix 39
39
B
287 289Right-handed 310
Helix 40
40
B
311 319Right-handed alpha
Helix 41
41
B
335 340Right-handed alpha
Helix 42
42
B
355 367Right-handed alpha
Helix 43
43
B
371 383Right-handed alpha
Helix 44
44
B
390 407Right-handed alpha
Helix 45
45
B
407 421Right-handed alpha
Helix 46
46
B
440 444Right-handed 310
Helix 47
47
B
450 455Right-handed alpha
Helix 48
48
B
456 460Right-handed 310
Helix 49
49
B
460 464Right-handed 310
Helix 50
50
B
466 487Right-handed alpha
Helix 51
51
B
525 534Right-handed alpha
Helix 52
52
B
535 541Right-handed alpha
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There are 7 sheets in PDB entry 4B84. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 12first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
59 61parallel
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There are 11 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 24first strand
Strand 2
A
27 36anti-parallel
Strand 3
A
98 104anti-parallel
Strand 4
A
145 149anti-parallel
Strand 5
A
112 118parallel
Strand 6
A
192 202parallel
Strand 7
A
224 228parallel
Strand 8
A
325 331parallel
Strand 9
A
424 430parallel
Strand 10
A
509 513parallel
Strand 11
A
519 522anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
68 69first strand
Strand 2
A
92 93parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
9 12first strand
Strand 2
B
15 18anti-parallel
Strand 3
B
59 61parallel
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There are 11 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
20 24first strand
Strand 2
B
27 36anti-parallel
Strand 3
B
98 104anti-parallel
Strand 4
B
145 149anti-parallel
Strand 5
B
112 118parallel
Strand 6
B
192 202parallel
Strand 7
B
224 228parallel
Strand 8
B
325 331parallel
Strand 9
B
424 430parallel
Strand 10
B
509 513parallel
Strand 11
B
519 522anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
68 69first strand
Strand 2
B
92 93parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
239 240first strand
Strand 2
B
302 303parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il