Analysis of interatomic Contacts of Structural Units in PDB entry:
4B86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4B86 entry

There are 12 chains in PDB entry 4B86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 214ARG 260
B
 GLY 214MET 264
C
 MET 1LEU 115
D
 MET 1LEU 115
E
 GLY 214MET 264
F
 GLY 214MET 264
G
 MET 1ALA 116
H
 MET 1ALA 116
I
 SER 216LEU 250
J
 SER 216GLU 248
K
 MET 1LEU 115
L
 MET 1LEU 115
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4B86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
214 260Right-handed alpha
Helix 2
2
B
214 263Right-handed alpha
Helix 3
3
C
3 19Right-handed alpha
Helix 4
4
C
26 41Right-handed alpha
Helix 5
5
C
67 71Right-handed 310
Helix 6
6
C
93 115Right-handed alpha
Helix 7
7
D
3 19Right-handed alpha
Helix 8
8
D
26 41Right-handed alpha
Helix 9
9
D
93 113Right-handed alpha
Helix 10
10
E
216 264Right-handed alpha
Helix 11
11
F
214 264Right-handed alpha
Helix 12
12
G
3 19Right-handed alpha
Helix 13
13
G
26 42Right-handed alpha
Helix 14
14
G
93 113Right-handed alpha
Helix 15
15
H
3 20Right-handed alpha
Helix 16
16
H
27 42Right-handed alpha
Helix 17
17
H
69 71Right-handed 310
Helix 18
18
H
93 115Right-handed alpha
Helix 19
19
I
216 250Right-handed alpha
Helix 20
20
J
216 248Right-handed alpha
Helix 21
21
K
3 19Right-handed alpha
Helix 22
22
K
26 41Right-handed alpha
Helix 23
23
K
93 113Right-handed alpha
Helix 24
24
L
3 19Right-handed alpha
Helix 25
25
L
26 41Right-handed alpha
Helix 26
26
L
69 71Right-handed 310
Helix 27
27
L
93 115Right-handed alpha
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There are 5 sheets in PDB entry 4B86. Click on sheet of interest to get list of strands forming it: CA, A, HA, KA, LA,

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 56first strand
Strand 2
C
91 92anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 55first strand
Strand 2
D
66 67anti-parallel
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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
54 55first strand
Strand 2
H
66 67anti-parallel
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There are 2 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
54 55first strand
Strand 2
K
66 67anti-parallel
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There are 3 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
66 67first strand
Strand 2
L
54 57anti-parallel
Strand 3
L
90 91anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il