Analysis of interatomic Contacts of Structural Units in PDB entry:
4B92


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4B92 entry

There are 2 chains in PDB entry 4B92 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 7LEU 482
B
VAL 8LEU 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4B92. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
81 92Right-handed alpha
Helix 2
2
A
108 121Right-handed alpha
Helix 3
3
A
138 152Right-handed alpha
Helix 4
4
A
170 185Right-handed alpha
Helix 5
5
A
194 208Right-handed alpha
Helix 6
6
A
214 219Right-handed alpha
Helix 7
7
A
222 240Right-handed alpha
Helix 8
8
A
250 263Right-handed alpha
Helix 9
9
A
273 278Right-handed alpha
Helix 10
10
A
279 285Right-handed 310
Helix 11
11
A
287 294Right-handed alpha
Helix 12
12
A
305 317Right-handed alpha
Helix 13
13
A
330 335Right-handed alpha
Helix 14
14
A
336 338Right-handed 310
Helix 15
15
A
340 344Right-handed 310
Helix 16
16
A
353 363Right-handed alpha
Helix 17
17
A
369 378Right-handed alpha
Helix 18
18
A
378 385Right-handed alpha
Helix 19
19
A
414 418Right-handed 310
Helix 20
20
A
468 480Right-handed alpha
Helix 21
21
B
81 92Right-handed alpha
Helix 22
22
B
108 121Right-handed alpha
Helix 23
23
B
138 152Right-handed alpha
Helix 24
24
B
170 185Right-handed alpha
Helix 25
25
B
194 208Right-handed alpha
Helix 26
26
B
214 219Right-handed alpha
Helix 27
27
B
222 240Right-handed alpha
Helix 28
28
B
250 263Right-handed alpha
Helix 29
29
B
273 278Right-handed alpha
Helix 30
30
B
279 285Right-handed 310
Helix 31
31
B
287 294Right-handed alpha
Helix 32
32
B
305 317Right-handed alpha
Helix 33
33
B
330 335Right-handed alpha
Helix 34
34
B
336 338Right-handed 310
Helix 35
35
B
340 344Right-handed 310
Helix 36
36
B
353 363Right-handed alpha
Helix 37
37
B
369 378Right-handed alpha
Helix 38
38
B
378 385Right-handed alpha
Helix 39
39
B
414 418Right-handed 310
Helix 40
40
B
468 482Right-handed alpha
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There are 8 sheets in PDB entry 4B92. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
34 39first strand
Strand 2
A
27 31anti-parallel
Strand 3
A
9 13anti-parallel
Strand 4
A
49 52parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 25first strand
Strand 2
A
16 18anti-parallel
Strand 3
A
57 60parallel
Strand 4
A
402 412anti-parallel
Strand 5
A
431 441anti-parallel
Strand 6
A
444 448anti-parallel
Strand 7
A
451 452anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
62 67first strand
Strand 2
A
94 101parallel
Strand 3
A
127 133parallel
Strand 4
A
156 160parallel
Strand 5
A
187 191parallel
Strand 6
A
243 245parallel
Strand 7
A
267 272parallel
Strand 8
A
321 323parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
72 73first strand
Strand 2
A
76 77anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
34 39first strand
Strand 2
B
27 31anti-parallel
Strand 3
B
9 13anti-parallel
Strand 4
B
49 52parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
23 25first strand
Strand 2
B
16 18anti-parallel
Strand 3
B
57 60parallel
Strand 4
B
402 406anti-parallel
Strand 5
B
435 441anti-parallel
Strand 6
B
444 448anti-parallel
Strand 7
B
451 452anti-parallel
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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
62 67first strand
Strand 2
B
94 101parallel
Strand 3
B
127 133parallel
Strand 4
B
156 160parallel
Strand 5
B
187 191parallel
Strand 6
B
243 245parallel
Strand 7
B
267 272parallel
Strand 8
B
321 323parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
72 73first strand
Strand 2
B
76 77anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il