Analysis of interatomic Contacts of Structural Units in PDB entry:
4B93


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4B93 entry

There are 2 chains in PDB entry 4B93 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ASN 163
B
 LYS 665VAL 895
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 4B93. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 34Right-handed alpha
Helix 2
2
A
71 91Right-handed alpha
Helix 3
3
A
92 96Right-handed 310
Helix 4
4
A
102 119Right-handed alpha
Helix 5
5
A
129 135Right-handed alpha
Helix 6
6
B
667 679Right-handed alpha
Helix 7
7
B
681 690Right-handed alpha
Helix 8
8
B
746 754Right-handed alpha
Helix 9
9
B
758 766Right-handed alpha
Helix 10
10
B
779 788Right-handed alpha
Helix 11
11
B
789 799Right-handed alpha
Helix 12
12
B
812 820Right-handed alpha
Helix 13
13
B
822 824Right-handed 310
Helix 14
14
B
825 832Right-handed alpha
Helix 15
15
B
845 853Right-handed alpha
Helix 16
16
B
855 865Right-handed alpha
Helix 17
17
B
879 883Right-handed 310
Helix 18
18
B
887 893Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4B93. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 19first strand
Strand 2
A
3 10anti-parallel
Strand 3
A
60 67anti-parallel
Strand 4
A
50 57anti-parallel
Strand 5
A
41 47anti-parallel
Strand 6
A
141 142parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
158 159anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il