Analysis of interatomic Contacts of Structural Units in PDB entry:
4BOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BOJ entry

There are 3 chains in PDB entry 4BOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 39GLY 374
B
 SER 39GLY 374
C
 PRO 32ILE 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4BOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 52Right-handed alpha
Helix 2
2
A
71 89Right-handed alpha
Helix 3
3
A
91 114Right-handed alpha
Helix 4
4
A
122 141Right-handed alpha
Helix 5
5
A
142 161Right-handed alpha
Helix 6
6
A
182 200Right-handed alpha
Helix 7
7
A
201 219Right-handed alpha
Helix 8
8
A
241 260Right-handed alpha
Helix 9
9
A
262 279Right-handed alpha
Helix 10
10
A
297 317Right-handed alpha
Helix 11
11
A
319 340Right-handed alpha
Helix 12
12
A
361 373Right-handed alpha
Helix 13
13
B
39 52Right-handed alpha
Helix 14
14
B
71 89Right-handed alpha
Helix 15
15
B
91 114Right-handed alpha
Helix 16
16
B
122 141Right-handed alpha
Helix 17
17
B
142 161Right-handed alpha
Helix 18
18
B
182 200Right-handed alpha
Helix 19
19
B
201 220Right-handed alpha
Helix 20
20
B
241 260Right-handed alpha
Helix 21
21
B
261 279Right-handed alpha
Helix 22
22
B
298 317Right-handed alpha
Helix 23
23
B
319 340Right-handed alpha
Helix 24
24
B
361 373Right-handed alpha
Helix 25
25
C
37 52Right-handed alpha
Helix 26
26
C
71 89Right-handed alpha
Helix 27
27
C
91 114Right-handed alpha
Helix 28
28
C
122 141Right-handed alpha
Helix 29
29
C
142 161Right-handed alpha
Helix 30
30
C
182 200Right-handed alpha
Helix 31
31
C
201 219Right-handed alpha
Helix 32
32
C
241 260Right-handed alpha
Helix 33
33
C
261 279Right-handed alpha
Helix 34
34
C
297 317Right-handed alpha
Helix 35
35
C
319 340Right-handed alpha
Helix 36
36
C
361 372Right-handed alpha
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There are 6 sheets in PDB entry 4BOJ. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
59 60anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
229 231anti-parallel
Strand 3
A
235 236anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
59 60anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
229 231anti-parallel
Strand 3
B
235 236anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
59 60anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 181first strand
Strand 2
C
229 231anti-parallel
Strand 3
C
235 236anti-parallel
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