Analysis of interatomic Contacts of Structural Units in PDB entry:
4BPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BPC entry

There are 2 chains in PDB entry 4BPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1368HIS 1588
A
 SER 1590SER 1942
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 4BPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1377 1399Right-handed alpha
Helix 2
2
A
1408 1413Right-handed alpha
Helix 3
3
A
1416 1420Right-handed 310
Helix 4
4
A
1428 1430Right-handed 310
Helix 5
5
A
1468 1470Right-handed 310
Helix 6
6
A
1471 1483Right-handed alpha
Helix 7
7
A
1564 1578Right-handed alpha
Helix 8
8
A
1594 1613Right-handed alpha
Helix 9
9
A
1616 1626Right-handed alpha
Helix 10
10
A
1634 1651Right-handed alpha
Helix 11
11
A
1660 1670Right-handed alpha
Helix 12
12
A
1678 1686Right-handed alpha
Helix 13
13
A
1697 1702Right-handed alpha
Helix 14
14
A
1703 1709Right-handed 310
Helix 15
15
A
1757 1759Right-handed 310
Helix 16
16
A
1760 1771Right-handed alpha
Helix 17
17
A
1853 1870Right-handed alpha
Helix 18
18
A
1884 1904Right-handed alpha
Helix 19
19
A
1907 1919Right-handed alpha
Helix 20
20
A
1925 1942Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4BPC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1373 1374first strand
Strand 2
A
1614 1615anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1432 1434first strand
Strand 2
A
1446 1454anti-parallel
Strand 3
A
1457 1464anti-parallel
Strand 4
A
1585 1588parallel
Strand 5
A
1486 1489parallel
Strand 6
A
1545 1552parallel
Strand 7
A
1529 1538anti-parallel
Strand 8
A
1516 1525anti-parallel
Strand 9
A
1509 1513anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1494 1495first strand
Strand 2
A
1498 1499anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1656 1657first strand
Strand 2
A
1905 1906anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1738 1741first strand
Strand 2
A
1750 1753anti-parallel
Strand 3
A
1876 1879parallel
Strand 4
A
1775 1778parallel
Strand 5
A
1833 1841parallel
Strand 6
A
1818 1827anti-parallel
Strand 7
A
1805 1814anti-parallel
Strand 8
A
1800 1802anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1783 1784first strand
Strand 2
A
1787 1788anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il