Analysis of interatomic Contacts of Structural Units in PDB entry:
4BY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BY0 entry

There are 2 chains in PDB entry 4BY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 30LYS 476
B
 LYS 30LYS 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 4BY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 51Right-handed alpha
Helix 2
2
A
51 63Right-handed alpha
Helix 3
3
A
85 90Right-handed alpha
Helix 4
4
A
101 105Right-handed 310
Helix 5
5
A
106 111Right-handed alpha
Helix 6
6
A
119 134Right-handed alpha
Helix 7
7
A
135 140Right-handed 310
Helix 8
8
A
141 158Right-handed alpha
Helix 9
9
A
167 184Right-handed alpha
Helix 10
10
A
185 192Right-handed alpha
Helix 11
11
A
193 208Right-handed alpha
Helix 12
12
A
214 219Right-handed alpha
Helix 13
13
A
224 251Right-handed alpha
Helix 14
14
A
260 268Right-handed alpha
Helix 15
15
A
277 309Right-handed alpha
Helix 16
16
A
312 324Right-handed alpha
Helix 17
17
A
331 337Right-handed alpha
Helix 18
18
A
339 353Right-handed alpha
Helix 19
19
A
383 388Right-handed alpha
Helix 20
20
A
424 443Right-handed alpha
Helix 21
21
A
466 468Right-handed 310
Helix 22
22
B
44 51Right-handed alpha
Helix 23
23
B
51 63Right-handed alpha
Helix 24
24
B
82 84Right-handed 310
Helix 25
25
B
85 91Right-handed alpha
Helix 26
26
B
100 105Right-handed 310
Helix 27
27
B
106 111Right-handed alpha
Helix 28
28
B
119 134Right-handed alpha
Helix 29
29
B
135 139Right-handed 310
Helix 30
30
B
141 158Right-handed alpha
Helix 31
31
B
167 184Right-handed alpha
Helix 32
32
B
185 192Right-handed alpha
Helix 33
33
B
193 206Right-handed alpha
Helix 34
34
B
214 221Right-handed alpha
Helix 35
35
B
223 250Right-handed alpha
Helix 36
36
B
260 268Right-handed alpha
Helix 37
37
B
277 309Right-handed alpha
Helix 38
38
B
312 325Right-handed alpha
Helix 39
39
B
331 339Right-handed alpha
Helix 40
40
B
339 353Right-handed alpha
Helix 41
41
B
383 388Right-handed alpha
Helix 42
42
B
417 421Right-handed 310
Helix 43
43
B
424 442Right-handed alpha
Helix 44
44
B
466 468Right-handed 310
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There are 7 sheets in PDB entry 4BY0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
76 80anti-parallel
Strand 3
A
379 382parallel
Strand 4
A
359 363anti-parallel
Strand 5
A
97 98anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 166first strand
Strand 2
A
470 474anti-parallel
Strand 3
A
445 447anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 456first strand
Strand 2
A
463 464anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 69first strand
Strand 2
B
77 79anti-parallel
Strand 3
B
379 382parallel
Strand 4
B
359 363anti-parallel
Strand 5
B
97 98anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 166first strand
Strand 2
B
470 475anti-parallel
Strand 3
B
443 447anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 369first strand
Strand 2
B
372 374anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 456first strand
Strand 2
B
463 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il