Analysis of interatomic Contacts of Structural Units in PDB entry:
4C02


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4C02 entry

There are 2 chains in PDB entry 4C02 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 178ASP 499
B
MET 1GLU 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4C02. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
179 185Right-handed alpha
Helix 2
2
A
197 207Right-handed alpha
Helix 3
3
A
241 255Right-handed alpha
Helix 4
4
A
290 298Right-handed alpha
Helix 5
5
A
301 321Right-handed alpha
Helix 6
6
A
338 340Right-handed 310
Helix 7
7
A
378 382Right-handed 310
Helix 8
8
A
383 388Right-handed alpha
Helix 9
9
A
395 416Right-handed alpha
Helix 10
10
A
440 449Right-handed alpha
Helix 11
11
A
458 463Right-handed 310
Helix 12
12
A
464 476Right-handed alpha
Helix 13
13
A
481 485Right-handed 310
Helix 14
14
A
487 499Right-handed alpha
Helix 15
15
B
57 65Right-handed alpha
Helix 16
16
B
79 82Right-handed 310
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There are 6 sheets in PDB entry 4C02. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
209 217first strand
Strand 2
A
220 227anti-parallel
Strand 3
A
230 237anti-parallel
Strand 4
A
277 283anti-parallel
Strand 5
A
265 272anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
331 333first strand
Strand 2
A
359 361anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
342 344first strand
Strand 2
A
350 352anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3 9first strand
Strand 2
B
72 77anti-parallel
Strand 3
B
98 108anti-parallel
Strand 4
B
22 31anti-parallel
Strand 5
B
36 39parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3 9first strand
Strand 2
B
72 77anti-parallel
Strand 3
B
98 108anti-parallel
Strand 4
B
22 31anti-parallel
Strand 5
B
47 50anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
36 39first strand
Strand 2
B
22 31parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il