Analysis of interatomic Contacts of Structural Units in PDB entry:
4C58


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4C58 entry

There are 2 chains in PDB entry 4C58 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 27GLU 333
B
 GLN 1SER 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4C58. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 93Right-handed alpha
Helix 2
2
A
108 112Right-handed 310
Helix 3
3
A
130 139Right-handed alpha
Helix 4
4
A
144 164Right-handed alpha
Helix 5
5
A
175 178Right-handed 310
Helix 6
6
A
241 259Right-handed alpha
Helix 7
7
A
285 287Right-handed 310
Helix 8
8
A
288 296Right-handed alpha
Helix 9
9
A
305 320Right-handed alpha
Helix 10
10
A
328 332Right-handed 310
Helix 11
11
B
95 99Right-handed 310
Helix 12
12
B
109 113Right-handed alpha
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There are 6 sheets in PDB entry 4C58. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, BD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
38 47anti-parallel
Strand 3
A
52 59anti-parallel
Strand 4
A
65 73anti-parallel
Strand 5
A
117 123anti-parallel
Strand 6
A
101 107anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
180 181anti-parallel
Strand 3
A
187 188anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
86 91anti-parallel
Strand 4
B
76 80anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
122 126parallel
Strand 3
B
100 106anti-parallel
Strand 4
B
117 118anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
122 126parallel
Strand 3
B
100 106anti-parallel
Strand 4
B
34 44anti-parallel
Strand 5
B
51 57anti-parallel
Strand 6
B
63 67anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
100 106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il