Analysis of interatomic Contacts of Structural Units in PDB entry:
4C6C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4C6C entry

There are 2 chains in PDB entry 4C6C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 1460LEU 1555
A
LEU 1557PRO 1821
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4C6C. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1484 1495Right-handed alpha
Helix 2
2
A
1512 1527Right-handed alpha
Helix 3
3
A
1548 1552Right-handed 310
Helix 4
4
A
1570 1581Right-handed alpha
Helix 5
5
A
1593 1606Right-handed alpha
Helix 6
6
A
1617 1630Right-handed alpha
Helix 7
7
A
1640 1645Right-handed alpha
Helix 8
8
A
1646 1648Right-handed 310
Helix 9
9
A
1649 1658Right-handed alpha
Helix 10
10
A
1666 1676Right-handed alpha
Helix 11
11
A
1677 1680Right-handed 310
Helix 12
12
A
1691 1696Right-handed alpha
Helix 13
13
A
1706 1720Right-handed alpha
Helix 14
14
A
1724 1733Right-handed alpha
Helix 15
15
A
1733 1741Right-handed alpha
Helix 16
16
A
1809 1816Right-handed 310
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There are 3 sheets in PDB entry 4C6C. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1462 1465first strand
Strand 2
A
1749 1759anti-parallel
Strand 3
A
1778 1788anti-parallel
Strand 4
A
1791 1795anti-parallel
Strand 5
A
1798 1799anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1467 1472first strand
Strand 2
A
1497 1502parallel
Strand 3
A
1530 1533parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1535 1536first strand
Strand 2
A
1555 1558parallel
Strand 3
A
1587 1590parallel
Strand 4
A
1610 1612parallel
Strand 5
A
1634 1638parallel
Strand 6
A
1682 1683parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il